PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32551-32600 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m1_e0 | * | 91.4375 | 94.4805 | 88.5845 | 86.5571 | 1746 | 102 | 1746 | 225 | 65 | 28.8889 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.4706 | 72.2222 | 81.2500 | 86.5546 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | * | map_l150_m1_e0 | homalt | 94.7603 | 91.9913 | 97.7011 | 86.5533 | 425 | 37 | 425 | 10 | 3 | 30.0000 | |
| qzeng-custom | SNP | tv | map_l150_m1_e0 | * | 82.5382 | 72.0674 | 96.5687 | 86.5523 | 7864 | 3048 | 7852 | 279 | 236 | 84.5878 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 86.5510 | 62 | 2 | 62 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | het | 96.4087 | 94.3662 | 98.5417 | 86.5509 | 469 | 28 | 473 | 7 | 1 | 14.2857 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4520 | 98.1481 | 98.7578 | 86.5497 | 477 | 9 | 477 | 6 | 1 | 16.6667 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | homalt | 96.6439 | 95.0285 | 98.3151 | 86.5465 | 1166 | 61 | 1167 | 20 | 12 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2366 | 100.0000 | 98.4848 | 86.5398 | 198 | 0 | 195 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 86.5385 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 86.5385 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.9514 | 98.2249 | 76.4045 | 86.5356 | 166 | 3 | 68 | 21 | 20 | 95.2381 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9777 | 98.0072 | 97.9483 | 86.5329 | 1082 | 22 | 1098 | 23 | 6 | 26.0870 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 82.8282 | 98.9485 | 71.2246 | 86.5324 | 941 | 10 | 948 | 383 | 192 | 50.1305 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3836 | 98.4252 | 98.3421 | 86.5303 | 1125 | 18 | 1127 | 19 | 8 | 42.1053 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 86.5285 | 27 | 1 | 26 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.6855 | 81.0440 | 95.5128 | 86.5285 | 295 | 69 | 298 | 14 | 13 | 92.8571 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.5248 | 19 | 0 | 19 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m2_e0 | * | 86.0203 | 89.1958 | 83.0632 | 86.5245 | 3294 | 399 | 4561 | 930 | 439 | 47.2043 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7990 | 98.4375 | 95.2141 | 86.5241 | 378 | 6 | 378 | 19 | 2 | 10.5263 | |
| anovak-vg | INDEL | I1_5 | map_siren | het | 46.4738 | 35.8715 | 65.9729 | 86.5236 | 603 | 1078 | 634 | 327 | 82 | 25.0765 | |
| qzeng-custom | INDEL | * | map_l125_m2_e1 | homalt | 83.8858 | 74.2894 | 96.3291 | 86.5211 | 575 | 199 | 761 | 29 | 11 | 37.9310 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m1_e0 | * | 94.5370 | 93.8419 | 95.2425 | 86.5208 | 1021 | 67 | 1021 | 51 | 27 | 52.9412 | |
| qzeng-custom | SNP | ti | map_l150_m1_e0 | * | 79.6789 | 67.7202 | 96.7669 | 86.5194 | 13349 | 6363 | 13259 | 443 | 380 | 85.7788 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | homalt | 98.8722 | 98.1954 | 99.5584 | 86.5187 | 1578 | 29 | 1578 | 7 | 7 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1914 | 98.9247 | 99.4595 | 86.5160 | 368 | 4 | 368 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.3814 | 99.5868 | 99.1770 | 86.5150 | 241 | 1 | 241 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 88.1356 | 86.5143 | 0 | 0 | 104 | 14 | 5 | 35.7143 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9185 | 72.5490 | 84.1463 | 86.5132 | 37 | 14 | 69 | 13 | 7 | 53.8462 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.2745 | 100.0000 | 75.8621 | 86.5116 | 22 | 0 | 22 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | homalt | 98.4233 | 98.2962 | 98.5507 | 86.5115 | 750 | 13 | 748 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | hetalt | 41.0050 | 26.2626 | 93.4783 | 86.5103 | 26 | 73 | 43 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | het | 96.7972 | 95.1049 | 98.5507 | 86.5103 | 136 | 7 | 136 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | * | 63.3663 | 60.3774 | 66.6667 | 86.5079 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 86.5075 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1903 | 98.7903 | 99.5935 | 86.5058 | 245 | 3 | 245 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | homalt | 99.2481 | 99.1803 | 99.3160 | 86.5054 | 726 | 6 | 726 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.1888 | 94.5312 | 100.0000 | 86.5052 | 121 | 7 | 117 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 80.5920 | 93.3333 | 70.9115 | 86.5051 | 672 | 48 | 529 | 217 | 24 | 11.0599 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | * | 97.7751 | 97.3790 | 98.1744 | 86.5042 | 483 | 13 | 484 | 9 | 2 | 22.2222 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | homalt | 83.6240 | 73.9187 | 96.2629 | 86.5020 | 564 | 199 | 747 | 29 | 11 | 37.9310 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 86.5010 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | * | 59.3006 | 61.3253 | 57.4054 | 86.4983 | 509 | 321 | 531 | 394 | 267 | 67.7665 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | homalt | 98.5965 | 98.9437 | 98.2517 | 86.4967 | 281 | 3 | 281 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | * | 98.6799 | 98.8842 | 98.4765 | 86.4946 | 709 | 8 | 711 | 11 | 3 | 27.2727 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | het | 94.9597 | 98.5882 | 91.5888 | 86.4942 | 838 | 12 | 784 | 72 | 70 | 97.2222 | |
| ckim-vqsr | INDEL | * | map_siren | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.4930 | 221 | 26 | 223 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_siren | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.4930 | 221 | 26 | 223 | 0 | 0 | ||