PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32351-32400 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | het | 94.6019 | 98.6282 | 90.8914 | 86.7158 | 2804 | 39 | 2804 | 281 | 52 | 18.5053 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | * | 58.4466 | 46.6667 | 78.1818 | 86.7150 | 42 | 48 | 43 | 12 | 12 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l100_m2_e0 | * | 96.5801 | 95.1530 | 98.0507 | 86.7138 | 3514 | 179 | 3521 | 70 | 18 | 25.7143 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 30.4000 | 21.8391 | 50.0000 | 86.7133 | 19 | 68 | 19 | 19 | 18 | 94.7368 | |
| ckim-dragen | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_siren | * | 97.2310 | 96.6601 | 97.8088 | 86.7125 | 492 | 17 | 491 | 11 | 3 | 27.2727 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | het | 94.7138 | 96.1089 | 93.3586 | 86.7121 | 494 | 20 | 492 | 35 | 5 | 14.2857 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9359 | 94.3241 | 93.5508 | 86.7120 | 1263 | 76 | 1262 | 87 | 31 | 35.6322 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 86.7081 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002compoundhet | het | 89.4149 | 87.4118 | 91.5119 | 86.7066 | 743 | 107 | 690 | 64 | 62 | 96.8750 | |
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | * | 82.9849 | 83.7775 | 82.2072 | 86.7066 | 723 | 140 | 730 | 158 | 62 | 39.2405 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8417 | 95.7746 | 100.0000 | 86.7063 | 68 | 3 | 67 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l125_m0_e0 | homalt | 95.6522 | 92.9577 | 98.5075 | 86.7063 | 264 | 20 | 264 | 4 | 3 | 75.0000 | |
| ckim-gatk | SNP | ti | map_l125_m2_e1 | het | 89.1406 | 82.1659 | 97.4093 | 86.6958 | 15683 | 3404 | 15679 | 417 | 41 | 9.8321 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 86.6953 | 62 | 2 | 62 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | het | 97.4161 | 97.2682 | 97.5645 | 86.6946 | 1353 | 38 | 1362 | 34 | 9 | 26.4706 | |
| ckim-gatk | SNP | ti | map_l125_m2_e0 | het | 89.0209 | 81.9824 | 97.3815 | 86.6933 | 15475 | 3401 | 15471 | 416 | 41 | 9.8558 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 86.6915 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.9415 | 96.3753 | 99.5595 | 86.6901 | 452 | 17 | 452 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e1 | * | 98.3513 | 98.3759 | 98.3267 | 86.6891 | 3695 | 61 | 3702 | 63 | 16 | 25.3968 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.7260 | 86.6888 | 0 | 0 | 47 | 234 | 10 | 4.2735 | |
| jli-custom | SNP | * | map_l250_m2_e1 | * | 98.2877 | 97.3832 | 99.2092 | 86.6868 | 7778 | 209 | 7778 | 62 | 30 | 48.3871 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | het | 81.2500 | 79.5918 | 82.9787 | 86.6856 | 39 | 10 | 39 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e1 | het | 94.6145 | 96.1686 | 93.1099 | 86.6848 | 502 | 20 | 500 | 37 | 5 | 13.5135 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | het | 98.0718 | 98.6342 | 97.5158 | 86.6842 | 2311 | 32 | 2316 | 59 | 11 | 18.6441 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | het | 98.1538 | 97.8528 | 98.4568 | 86.6831 | 319 | 7 | 319 | 5 | 1 | 20.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | hetalt | 61.5385 | 44.8000 | 98.2456 | 86.6822 | 56 | 69 | 56 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5922 | 99.5471 | 99.6374 | 86.6820 | 1099 | 5 | 1099 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | * | 93.9648 | 93.7865 | 94.1438 | 86.6818 | 1283 | 85 | 1270 | 79 | 38 | 48.1013 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | hetalt | 60.7330 | 43.9394 | 98.3051 | 86.6817 | 58 | 74 | 58 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0820 | 95.0820 | 95.0820 | 86.6812 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e1 | * | 98.3578 | 98.3578 | 98.3578 | 86.6797 | 1138 | 19 | 1138 | 19 | 6 | 31.5789 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | * | 98.5850 | 98.3151 | 98.8564 | 86.6789 | 2159 | 37 | 2161 | 25 | 8 | 32.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 76.8434 | 94.7617 | 64.6239 | 86.6785 | 4016 | 222 | 3986 | 2182 | 61 | 2.7956 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 95.2221 | 98.5390 | 92.1212 | 86.6783 | 1821 | 27 | 1824 | 156 | 11 | 7.0513 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 67.0051 | 56.8966 | 81.4815 | 86.6776 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_siren | het | 79.3596 | 91.6084 | 70.0000 | 86.6760 | 131 | 12 | 133 | 57 | 52 | 91.2281 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | * | 97.0588 | 96.1165 | 98.0198 | 86.6755 | 99 | 4 | 99 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.6449 | 98.3108 | 98.9813 | 86.6742 | 582 | 10 | 583 | 6 | 4 | 66.6667 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.2218 | 98.8372 | 99.6094 | 86.6736 | 255 | 3 | 255 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | het | 97.6497 | 97.6497 | 97.6497 | 86.6731 | 1745 | 42 | 1745 | 42 | 26 | 61.9048 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | * | 97.8366 | 97.9003 | 97.7730 | 86.6718 | 1119 | 24 | 1361 | 31 | 16 | 51.6129 | |
| asubramanian-gatk | INDEL | * | map_siren | het | 91.9143 | 87.2227 | 97.1393 | 86.6717 | 3932 | 576 | 3939 | 116 | 14 | 12.0690 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | het | 93.7475 | 98.8142 | 89.1751 | 86.6713 | 2250 | 27 | 2216 | 269 | 92 | 34.2007 | |
| gduggal-snapfb | INDEL | C1_5 | HG002compoundhet | hetalt | 66.6667 | 100.0000 | 50.0000 | 86.6667 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | het | 92.9271 | 95.7746 | 90.2439 | 86.6667 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |