PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32251-32300 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_siren | hetalt | 93.3045 | 87.4494 | 100.0000 | 86.8039 | 216 | 31 | 218 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | HG002compoundhet | het | 81.1158 | 79.8077 | 82.4675 | 86.8038 | 166 | 42 | 127 | 27 | 25 | 92.5926 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 96.8806 | 98.3570 | 95.4480 | 86.8027 | 1317 | 22 | 1321 | 63 | 6 | 9.5238 | |
| anovak-vg | INDEL | I1_5 | map_l150_m2_e0 | homalt | 68.6340 | 94.0299 | 54.0390 | 86.8015 | 189 | 12 | 194 | 165 | 148 | 89.6970 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.8000 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | het | 92.4706 | 91.9807 | 92.9658 | 86.7974 | 17767 | 1549 | 17789 | 1346 | 738 | 54.8291 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | * | 97.8376 | 97.4311 | 98.2476 | 86.7964 | 2579 | 68 | 2579 | 46 | 30 | 65.2174 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 86.7961 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | het | 93.8477 | 95.0809 | 92.6461 | 86.7956 | 2822 | 146 | 2822 | 224 | 118 | 52.6786 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | hetalt | 93.5622 | 87.9032 | 100.0000 | 86.7947 | 109 | 15 | 110 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 93.5622 | 87.9032 | 100.0000 | 86.7947 | 109 | 15 | 110 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 86.7946 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 86.7925 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 41.6667 | 26.3158 | 100.0000 | 86.7925 | 5 | 14 | 14 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 14.2857 | 86.7925 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 86.7925 | 35 | 1 | 35 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 86.7925 | 35 | 1 | 35 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m0_e0 | het | 85.7143 | 85.7143 | 85.7143 | 86.7925 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 86.7925 | 7 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 54.5455 | 60.0000 | 50.0000 | 86.7925 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 96.0913 | 95.6007 | 96.5870 | 86.7899 | 565 | 26 | 566 | 20 | 2 | 10.0000 | |
| jli-custom | INDEL | * | map_l125_m2_e1 | * | 98.5806 | 98.2921 | 98.8708 | 86.7884 | 2187 | 38 | 2189 | 25 | 8 | 32.0000 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | het | 85.4123 | 75.0157 | 99.1542 | 86.7876 | 11956 | 3982 | 11958 | 102 | 20 | 19.6078 | |
| ciseli-custom | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 10.8949 | 86.7866 | 0 | 1 | 28 | 229 | 83 | 36.2445 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | het | 97.0787 | 96.6555 | 97.5057 | 86.7845 | 289 | 10 | 430 | 11 | 5 | 45.4545 | |
| cchapple-custom | INDEL | * | map_l100_m0_e0 | het | 94.3799 | 96.1802 | 92.6457 | 86.7828 | 982 | 39 | 1033 | 82 | 17 | 20.7317 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 88.2477 | 83.3900 | 93.7063 | 86.7826 | 1471 | 293 | 1474 | 99 | 13 | 13.1313 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.8128 | 92.2530 | 99.6584 | 86.7818 | 1167 | 98 | 1167 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 93.6170 | 91.6667 | 95.6522 | 86.7816 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8254 | 95.3125 | 98.3871 | 86.7804 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l100_m2_e1 | * | 96.5544 | 95.0745 | 98.0811 | 86.7793 | 3571 | 185 | 3578 | 70 | 18 | 25.7143 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7769 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7769 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | * | 67.7170 | 59.7561 | 78.1250 | 86.7769 | 49 | 33 | 50 | 14 | 10 | 71.4286 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2353 | 83.3333 | 93.7500 | 86.7769 | 30 | 6 | 30 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1390 | 80.3922 | 95.1220 | 86.7742 | 41 | 10 | 39 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | * | 68.1223 | 60.0000 | 78.7879 | 86.7735 | 51 | 34 | 52 | 14 | 10 | 71.4286 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 17.0866 | 13.7546 | 22.5490 | 86.7704 | 37 | 232 | 23 | 79 | 9 | 11.3924 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 86.7690 | 224 | 4 | 224 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 48.9473 | 54.4444 | 44.4584 | 86.7689 | 343 | 287 | 353 | 441 | 11 | 2.4943 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 86.7676 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | * | 97.8272 | 97.9257 | 97.7289 | 86.7675 | 1133 | 24 | 1377 | 32 | 17 | 53.1250 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.0249 | 95.0450 | 97.0252 | 86.7656 | 422 | 22 | 424 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.9064 | 83.4507 | 95.1253 | 86.7650 | 711 | 141 | 683 | 35 | 18 | 51.4286 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 86.7647 | 18 | 2 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 86.7647 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 86.7647 | 108 | 4 | 108 | 0 | 0 | ||