PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31901-31950 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l125_m2_e0 | homalt | 98.8867 | 98.9515 | 98.8220 | 87.0968 | 755 | 8 | 755 | 9 | 4 | 44.4444 | |
| ckim-isaac | SNP | tv | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | het | 87.4983 | 97.7667 | 79.1818 | 87.0966 | 1182 | 27 | 1529 | 402 | 157 | 39.0547 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.0949 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | * | map_l125_m1_e0 | * | 72.5033 | 74.1813 | 70.8995 | 87.0946 | 1563 | 544 | 1608 | 660 | 372 | 56.3636 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.0902 | 63 | 2 | 63 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | het | 71.9298 | 69.4915 | 74.5455 | 87.0892 | 41 | 18 | 41 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.7541 | 96.2121 | 99.3464 | 87.0886 | 127 | 5 | 152 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l250_m2_e0 | het | 97.7202 | 96.5537 | 98.9152 | 87.0848 | 5015 | 179 | 5015 | 55 | 24 | 43.6364 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8360 | 98.9498 | 98.7224 | 87.0837 | 848 | 9 | 850 | 11 | 2 | 18.1818 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | * | 92.1981 | 91.1068 | 93.3159 | 87.0820 | 1424 | 139 | 1424 | 102 | 64 | 62.7451 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.0813 | 5 | 0 | 27 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4048 | 98.8166 | 100.0000 | 87.0810 | 501 | 6 | 501 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l125_m2_e0 | homalt | 96.9360 | 97.2477 | 96.6263 | 87.0809 | 742 | 21 | 1117 | 39 | 35 | 89.7436 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.9950 | 99.4949 | 98.5000 | 87.0801 | 197 | 1 | 197 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 66.0697 | 66.0377 | 66.1017 | 87.0756 | 35 | 18 | 78 | 40 | 3 | 7.5000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 81.8182 | 69.2308 | 100.0000 | 87.0748 | 36 | 16 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.0748 | 20 | 2 | 19 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 25.2427 | 15.4762 | 68.4211 | 87.0748 | 26 | 142 | 26 | 12 | 8 | 66.6667 | |
| mlin-fermikit | SNP | tv | segdup | het | 97.5120 | 96.3685 | 98.6829 | 87.0738 | 5095 | 192 | 5095 | 68 | 1 | 1.4706 | |
| jlack-gatk | SNP | tv | map_l150_m2_e1 | het | 92.1722 | 98.8977 | 86.3032 | 87.0729 | 7267 | 81 | 7265 | 1153 | 60 | 5.2038 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4925 | 98.9899 | 98.0000 | 87.0718 | 196 | 2 | 196 | 4 | 2 | 50.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | homalt | 88.9945 | 81.6129 | 97.8441 | 87.0712 | 506 | 114 | 590 | 13 | 1 | 7.6923 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 75.9237 | 62.4049 | 96.9194 | 87.0711 | 410 | 247 | 409 | 13 | 4 | 30.7692 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 20.0000 | 87.0690 | 0 | 0 | 6 | 24 | 4 | 16.6667 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1683 | 75.0000 | 93.3333 | 87.0690 | 27 | 9 | 28 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 100.0000 | 86.6667 | 87.0690 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 100.0000 | 86.6667 | 87.0690 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | homalt | 99.6791 | 99.4664 | 99.8928 | 87.0650 | 932 | 5 | 932 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 46.1032 | 32.2581 | 80.7692 | 87.0647 | 20 | 42 | 21 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | hetalt | 75.7576 | 62.5000 | 96.1538 | 87.0647 | 25 | 15 | 25 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | * | 72.1141 | 56.5817 | 99.4011 | 87.0646 | 18582 | 14259 | 18588 | 112 | 36 | 32.1429 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | homalt | 92.3139 | 88.0597 | 97.0000 | 87.0634 | 59 | 8 | 97 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.0629 | 37 | 0 | 37 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_siren | het | 93.1801 | 98.4533 | 88.4430 | 87.0613 | 1655 | 26 | 1653 | 216 | 106 | 49.0741 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.0588 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.1860 | 98.0620 | 96.3255 | 87.0584 | 253 | 5 | 367 | 14 | 10 | 71.4286 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | het | 63.7840 | 46.8782 | 99.7614 | 87.0574 | 21751 | 24648 | 21745 | 52 | 14 | 26.9231 | |
| qzeng-custom | SNP | ti | map_l150_m2_e1 | * | 80.4222 | 68.7352 | 96.8977 | 87.0560 | 14244 | 6479 | 14149 | 453 | 387 | 85.4305 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.8997 | 98.7080 | 99.0921 | 87.0551 | 764 | 10 | 764 | 7 | 4 | 57.1429 | |
| cchapple-custom | SNP | ti | segdup | homalt | 99.8600 | 99.8668 | 99.8533 | 87.0523 | 7495 | 10 | 7487 | 11 | 11 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 87.0518 | 65 | 2 | 65 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | * | 83.2162 | 85.2022 | 81.3206 | 87.0514 | 927 | 161 | 936 | 215 | 77 | 35.8140 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | homalt | 78.7879 | 86.6667 | 72.2222 | 87.0504 | 13 | 2 | 13 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.0504 | 18 | 1 | 18 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 11.1111 | 87.0504 | 0 | 0 | 4 | 32 | 2 | 6.2500 | |