PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31551-31600 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 87.4046 | 33 | 1 | 33 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.0630 | 100.0000 | 92.4242 | 87.4046 | 122 | 0 | 122 | 10 | 10 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | het | 53.8462 | 46.6667 | 63.6364 | 87.4046 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| gduggal-snapvard | SNP | ti | map_l150_m0_e0 | het | 85.6207 | 95.1933 | 77.7975 | 87.4036 | 4852 | 245 | 4818 | 1375 | 94 | 6.8364 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1749 | 96.0000 | 96.3504 | 87.4023 | 264 | 11 | 264 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | het | 97.8094 | 98.2609 | 97.3621 | 87.4018 | 339 | 6 | 406 | 11 | 4 | 36.3636 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 88.7246 | 84.2105 | 93.7500 | 87.4016 | 16 | 3 | 15 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3045 | 99.1512 | 99.4582 | 87.3902 | 1285 | 11 | 1285 | 7 | 6 | 85.7143 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3045 | 99.1512 | 99.4582 | 87.3902 | 1285 | 11 | 1285 | 7 | 6 | 85.7143 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 9.7065 | 87.3897 | 0 | 0 | 43 | 400 | 22 | 5.5000 | |
| mlin-fermikit | INDEL | D6_15 | map_siren | homalt | 82.5533 | 81.5385 | 83.5938 | 87.3892 | 106 | 24 | 107 | 21 | 20 | 95.2381 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 71.9701 | 57.8195 | 95.2912 | 87.3887 | 769 | 561 | 769 | 38 | 33 | 86.8421 | |
| jli-custom | INDEL | * | map_l100_m2_e0 | hetalt | 93.2274 | 88.0000 | 99.1150 | 87.3884 | 110 | 15 | 112 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3931 | 96.8880 | 97.9036 | 87.3876 | 467 | 15 | 467 | 10 | 3 | 30.0000 | |
| cchapple-custom | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 92.8571 | 87.3874 | 0 | 0 | 13 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 87.3874 | 28 | 1 | 28 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 86.4488 | 81.0811 | 92.5776 | 87.3872 | 690 | 161 | 686 | 55 | 9 | 16.3636 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | * | 97.8142 | 97.4308 | 98.2005 | 87.3865 | 493 | 13 | 764 | 14 | 8 | 57.1429 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.8835 | 99.1132 | 98.6549 | 87.3860 | 2347 | 21 | 2347 | 32 | 17 | 53.1250 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | homalt | 99.2248 | 99.2248 | 99.2248 | 87.3859 | 768 | 6 | 768 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 83.7918 | 78.7037 | 89.5833 | 87.3850 | 85 | 23 | 86 | 10 | 6 | 60.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 87.3846 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | het | 91.0262 | 89.8926 | 92.1888 | 87.3834 | 11384 | 1280 | 11389 | 965 | 535 | 55.4404 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.3832 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.3832 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.1379 | 98.8539 | 99.4236 | 87.3818 | 345 | 4 | 345 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 83.8710 | 95.1220 | 75.0000 | 87.3786 | 39 | 2 | 39 | 13 | 13 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 87.3786 | 12 | 3 | 13 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 84.7106 | 74.5614 | 98.0583 | 87.3775 | 170 | 58 | 202 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.2547 | 79.1667 | 94.7368 | 87.3754 | 38 | 10 | 36 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | homalt | 99.6047 | 99.5485 | 99.6610 | 87.3743 | 1764 | 8 | 1764 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | * | 95.8417 | 96.5847 | 95.1101 | 87.3742 | 2121 | 75 | 2159 | 111 | 23 | 20.7207 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 92.4584 | 97.6813 | 87.7658 | 87.3735 | 2654 | 63 | 2683 | 374 | 17 | 4.5455 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 96.6925 | 97.0370 | 96.3504 | 87.3733 | 131 | 4 | 132 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 97.6378 | 95.3846 | 100.0000 | 87.3727 | 62 | 3 | 62 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7738 | 97.6852 | 97.8626 | 87.3723 | 1266 | 30 | 1282 | 28 | 7 | 25.0000 | |
| ckim-gatk | INDEL | * | map_l125_m2_e1 | homalt | 99.1607 | 99.2248 | 99.0968 | 87.3717 | 768 | 6 | 768 | 7 | 4 | 57.1429 | |
| jli-custom | SNP | ti | segdup | homalt | 99.9200 | 99.8934 | 99.9467 | 87.3710 | 7497 | 8 | 7497 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.3244 | 88.0353 | 99.2898 | 87.3699 | 699 | 95 | 699 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | * | 98.2210 | 97.8538 | 98.5910 | 87.3689 | 7067 | 155 | 7067 | 101 | 66 | 65.3465 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 47.4074 | 36.7816 | 66.6667 | 87.3684 | 32 | 55 | 32 | 16 | 15 | 93.7500 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.6522 | 100.0000 | 91.6667 | 87.3684 | 22 | 0 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 8.3333 | 87.3684 | 0 | 0 | 2 | 22 | 12 | 54.5455 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3872 | 100.0000 | 94.9074 | 87.3684 | 205 | 0 | 205 | 11 | 10 | 90.9091 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.3872 | 100.0000 | 94.9074 | 87.3684 | 205 | 0 | 205 | 11 | 10 | 90.9091 | |
| ckim-dragen | INDEL | C1_5 | * | * | 76.5957 | 90.0000 | 66.6667 | 87.3684 | 9 | 1 | 8 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | * | hetalt | 80.0000 | 100.0000 | 66.6667 | 87.3684 | 1 | 0 | 8 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | het | 94.5817 | 96.3296 | 92.8962 | 87.3662 | 1286 | 49 | 1360 | 104 | 19 | 18.2692 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5173 | 98.0392 | 99.0000 | 87.3658 | 200 | 4 | 198 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 97.0588 | 100.0000 | 94.2857 | 87.3646 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |