PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31101-31150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 99.3243 | 100.0000 | 98.6577 | 87.6860 | 15 | 0 | 147 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 86.0000 | 87.6847 | 0 | 0 | 86 | 14 | 13 | 92.8571 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6822 | 99.3902 | 90.4000 | 87.6847 | 163 | 1 | 113 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 50.0650 | 35.5685 | 84.5070 | 87.6843 | 122 | 221 | 120 | 22 | 19 | 86.3636 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 71.0216 | 96.2525 | 56.2712 | 87.6827 | 488 | 19 | 498 | 387 | 79 | 20.4134 | |
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | het | 98.0000 | 97.8970 | 98.1033 | 87.6817 | 4655 | 100 | 4655 | 90 | 55 | 61.1111 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 87.6812 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 87.6812 | 17 | 3 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.1429 | 94.4444 | 100.0000 | 87.6802 | 187 | 11 | 188 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | segdup | het | 98.6738 | 99.4225 | 97.9363 | 87.6799 | 17217 | 100 | 17227 | 363 | 1 | 0.2755 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e1 | homalt | 98.9217 | 98.3634 | 99.4863 | 87.6793 | 1743 | 29 | 1743 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9423 | 99.0599 | 98.8249 | 87.6792 | 843 | 8 | 841 | 10 | 8 | 80.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | het | 91.3043 | 85.7143 | 97.6744 | 87.6791 | 42 | 7 | 42 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | * | 98.0939 | 98.3402 | 97.8488 | 87.6784 | 4503 | 76 | 4503 | 99 | 3 | 3.0303 | |
| ltrigg-rtg2 | SNP | tv | segdup | het | 98.5667 | 99.4137 | 97.7340 | 87.6779 | 5256 | 31 | 5262 | 122 | 2 | 1.6393 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.6777 | 26 | 0 | 26 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 87.6777 | 1 | 0 | 0 | 26 | 2 | 7.6923 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e1 | * | 59.0339 | 60.9195 | 57.2614 | 87.6774 | 530 | 340 | 552 | 412 | 282 | 68.4466 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 87.6761 | 35 | 1 | 35 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 87.6755 | 81 | 1 | 79 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 78.1671 | 99.6564 | 64.3016 | 87.6742 | 290 | 1 | 290 | 161 | 160 | 99.3789 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.4221 | 98.4190 | 98.4252 | 87.6729 | 498 | 8 | 500 | 8 | 2 | 25.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.4916 | 85.0340 | 99.0106 | 87.6728 | 1500 | 264 | 1501 | 15 | 3 | 20.0000 | |
| astatham-gatk | INDEL | * | map_l100_m0_e0 | * | 96.7251 | 96.2892 | 97.1649 | 87.6728 | 1505 | 58 | 1508 | 44 | 9 | 20.4545 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 96.9768 | 98.8095 | 95.2108 | 87.6725 | 1826 | 22 | 1829 | 92 | 8 | 8.6957 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | het | 92.7489 | 92.3145 | 93.1874 | 87.6725 | 18798 | 1565 | 18822 | 1376 | 752 | 54.6512 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 87.6712 | 27 | 1 | 27 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.6712 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.6712 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | het | 96.1457 | 95.6522 | 96.6443 | 87.6707 | 286 | 13 | 288 | 10 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | homalt | 77.9222 | 74.8832 | 81.2183 | 87.6682 | 641 | 215 | 640 | 148 | 105 | 70.9459 | |
| ckim-vqsr | SNP | * | map_siren | hetalt | 70.8661 | 55.5556 | 97.8261 | 87.6676 | 45 | 36 | 45 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_siren | hetalt | 70.8661 | 55.5556 | 97.8261 | 87.6676 | 45 | 36 | 45 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | segdup | homalt | 99.4577 | 98.9740 | 99.9462 | 87.6674 | 7428 | 77 | 7428 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0988 | 99.0063 | 99.1915 | 87.6655 | 2690 | 27 | 2699 | 22 | 15 | 68.1818 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | * | 94.0775 | 90.5660 | 97.8723 | 87.6640 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | HG002complexvar | het | 83.1683 | 100.0000 | 71.1864 | 87.6634 | 4 | 0 | 168 | 68 | 30 | 44.1176 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 59.3452 | 47.5410 | 78.9474 | 87.6623 | 29 | 32 | 30 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.6623 | 20 | 2 | 19 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 66.1640 | 61.9048 | 71.0526 | 87.6623 | 26 | 16 | 27 | 11 | 5 | 45.4545 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | * | 82.9105 | 71.3793 | 98.8854 | 87.6621 | 621 | 249 | 621 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6989 | 95.7055 | 95.6923 | 87.6614 | 312 | 14 | 311 | 14 | 1 | 7.1429 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 66.4821 | 91.3098 | 52.2696 | 87.6612 | 725 | 69 | 760 | 694 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | * | 77.8754 | 73.2558 | 83.1169 | 87.6603 | 63 | 23 | 64 | 13 | 9 | 69.2308 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | het | 94.1247 | 95.4229 | 92.8614 | 87.6593 | 3148 | 151 | 3148 | 242 | 125 | 51.6529 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.3086 | 96.6046 | 98.0229 | 87.6589 | 882 | 31 | 942 | 19 | 9 | 47.3684 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | * | 92.3966 | 97.9875 | 87.4091 | 87.6580 | 4090 | 84 | 4089 | 589 | 40 | 6.7912 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.5234 | 86.7470 | 99.1239 | 87.6564 | 792 | 121 | 792 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 76.8075 | 94.3048 | 64.7869 | 87.6558 | 6491 | 392 | 6399 | 3478 | 109 | 3.1340 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.8992 | 93.9850 | 100.0000 | 87.6557 | 125 | 8 | 109 | 0 | 0 | ||