PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30901-30950 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | het | 97.5992 | 95.8799 | 99.3814 | 87.8462 | 4980 | 214 | 4980 | 31 | 14 | 45.1613 | |
| qzeng-custom | SNP | * | segdup | homalt | 99.2653 | 99.1250 | 99.4061 | 87.8458 | 10649 | 94 | 10544 | 63 | 57 | 90.4762 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 95.8267 | 95.6693 | 95.9847 | 87.8457 | 486 | 22 | 502 | 21 | 5 | 23.8095 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.3357 | 93.9394 | 96.7742 | 87.8431 | 62 | 4 | 60 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.8431 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.8431 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7656 | 91.2621 | 96.4103 | 87.8429 | 188 | 18 | 188 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | I6_15 | map_siren | het | 65.4206 | 48.9510 | 98.5915 | 87.8425 | 70 | 73 | 70 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.7724 | 88.0435 | 93.6759 | 87.8424 | 243 | 33 | 237 | 16 | 1 | 6.2500 | |
| anovak-vg | INDEL | * | map_l125_m2_e0 | * | 72.8494 | 74.4991 | 71.2712 | 87.8407 | 1636 | 560 | 1682 | 678 | 383 | 56.4897 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | homalt | 85.2459 | 76.4706 | 96.2963 | 87.8378 | 26 | 8 | 26 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e0 | homalt | 97.2222 | 97.2222 | 97.2222 | 87.8378 | 35 | 1 | 35 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.8378 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 87.8378 | 9 | 2 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.8378 | 36 | 0 | 36 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | homalt | 98.4183 | 98.5915 | 98.2456 | 87.8361 | 280 | 4 | 280 | 5 | 4 | 80.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.5316 | 65.3226 | 56.3953 | 87.8359 | 81 | 43 | 97 | 75 | 22 | 29.3333 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.2193 | 97.7419 | 98.7013 | 87.8357 | 303 | 7 | 304 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7587 | 94.2652 | 93.2576 | 87.8356 | 1315 | 80 | 1314 | 95 | 35 | 36.8421 | |
| hfeng-pmm3 | SNP | * | map_l250_m2_e0 | homalt | 99.4794 | 99.5905 | 99.3685 | 87.8350 | 2675 | 11 | 2675 | 17 | 6 | 35.2941 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 95.9641 | 93.8596 | 98.1651 | 87.8348 | 107 | 7 | 107 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m0_e0 | * | 90.2459 | 86.2613 | 94.6165 | 87.8341 | 6781 | 1080 | 6784 | 386 | 225 | 58.2902 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | het | 92.5133 | 91.8831 | 93.1522 | 87.8339 | 849 | 75 | 857 | 63 | 12 | 19.0476 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 98.3275 | 98.3264 | 98.3287 | 87.8326 | 705 | 12 | 706 | 12 | 4 | 33.3333 | |
| anovak-vg | SNP | * | segdup | homalt | 98.7938 | 98.6875 | 98.9004 | 87.8317 | 10602 | 141 | 10523 | 117 | 108 | 92.3077 | |
| ckim-gatk | SNP | ti | segdup | homalt | 99.4711 | 98.9873 | 99.9596 | 87.8310 | 7429 | 76 | 7429 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 95.3077 | 95.1613 | 95.4545 | 87.8309 | 295 | 15 | 294 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 87.8307 | 23 | 1 | 23 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 88.3843 | 82.1429 | 95.6522 | 87.8307 | 23 | 5 | 22 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 87.8307 | 23 | 1 | 23 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | map_l250_m2_e1 | homalt | 98.7018 | 97.9029 | 99.5138 | 87.8305 | 2661 | 57 | 2661 | 13 | 13 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2973 | 97.2973 | 97.2973 | 87.8289 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 90.8495 | 89.8305 | 91.8919 | 87.8289 | 53 | 6 | 68 | 6 | 1 | 16.6667 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 12 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 12 | 0 | 13 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 87.8261 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 96.4286 | 87.8261 | 0 | 0 | 27 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.1961 | 100.0000 | 82.1429 | 87.8261 | 23 | 0 | 23 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | het | 92.5169 | 91.7219 | 93.3259 | 87.8250 | 831 | 75 | 839 | 60 | 12 | 20.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.7612 | 97.0370 | 98.4962 | 87.8205 | 131 | 4 | 131 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | * | 97.5871 | 96.6368 | 98.5562 | 87.8193 | 1293 | 45 | 1297 | 19 | 4 | 21.0526 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 87.8187 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 83.6364 | 74.1935 | 95.8333 | 87.8173 | 23 | 8 | 23 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | homalt | 84.9002 | 75.9715 | 96.2072 | 87.8170 | 958 | 303 | 1040 | 41 | 2 | 4.8781 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 87.8165 | 0 | 0 | 0 | 77 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 87.8165 | 0 | 0 | 0 | 77 | 0 | 0.0000 | ||
| hfeng-pmm1 | SNP | ti | map_l250_m2_e1 | homalt | 99.5205 | 99.5485 | 99.4924 | 87.8161 | 1764 | 8 | 1764 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | homalt | 37.6187 | 23.1669 | 100.0000 | 87.8146 | 891 | 2955 | 891 | 0 | 0 | ||