PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29901-29950 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | ti | map_l250_m2_e0 | * | 98.8124 | 98.0232 | 99.6144 | 88.6331 | 4909 | 99 | 4909 | 19 | 9 | 47.3684 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | homalt | 83.7803 | 99.6960 | 72.2467 | 88.6301 | 328 | 1 | 328 | 126 | 125 | 99.2063 | |
| ckim-gatk | INDEL | I1_5 | HG002compoundhet | homalt | 73.8739 | 99.6960 | 58.6762 | 88.6290 | 328 | 1 | 328 | 231 | 231 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4059 | 99.4716 | 99.3404 | 88.6280 | 1506 | 8 | 1506 | 10 | 9 | 90.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.6277 | 95.1220 | 98.1818 | 88.6246 | 234 | 12 | 216 | 4 | 2 | 50.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 88.6228 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 88.6228 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | het | 97.6068 | 97.2743 | 97.9417 | 88.6222 | 571 | 16 | 571 | 12 | 2 | 16.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9105 | 92.6829 | 97.2477 | 88.6221 | 228 | 18 | 212 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | * | 96.5009 | 95.2727 | 97.7612 | 88.6200 | 262 | 13 | 262 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | * | 81.1709 | 76.0000 | 87.0968 | 88.6197 | 133 | 42 | 135 | 20 | 20 | 100.0000 | |
| qzeng-custom | SNP | * | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m1_e0 | het | 92.7536 | 86.4865 | 100.0000 | 88.6179 | 96 | 15 | 98 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6744 | 97.2222 | 98.1308 | 88.6170 | 105 | 3 | 105 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | het | 97.2591 | 96.5928 | 97.9346 | 88.6168 | 567 | 20 | 569 | 12 | 3 | 25.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.6739 | 98.4848 | 98.8636 | 88.6158 | 65 | 1 | 87 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 94.8879 | 97.0817 | 92.7911 | 88.6129 | 499 | 15 | 502 | 39 | 4 | 10.2564 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.6121 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.6121 | 32 | 1 | 32 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.7694 | 88.7681 | 94.9807 | 88.6104 | 245 | 31 | 246 | 13 | 6 | 46.1538 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1960 | 92.6421 | 97.8947 | 88.6091 | 277 | 22 | 279 | 6 | 1 | 16.6667 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | het | 98.4670 | 98.0662 | 98.8712 | 88.6090 | 1927 | 38 | 1927 | 22 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | segdup | het | 94.1316 | 90.3614 | 98.2301 | 88.6089 | 75 | 8 | 111 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.1125 | 83.1756 | 93.6725 | 88.6078 | 791 | 160 | 755 | 51 | 22 | 43.1373 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | het | 66.6667 | 83.3333 | 55.5556 | 88.6076 | 5 | 1 | 5 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | het | 66.6667 | 83.3333 | 55.5556 | 88.6076 | 5 | 1 | 5 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 54.2636 | 41.6667 | 77.7778 | 88.6076 | 20 | 28 | 21 | 6 | 3 | 50.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 88.6076 | 0 | 0 | 0 | 9 | 0 | 0.0000 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | * | 97.3214 | 96.6619 | 97.9899 | 88.6072 | 1361 | 47 | 1365 | 28 | 4 | 14.2857 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | * | 90.3981 | 94.5158 | 86.6242 | 88.6067 | 810 | 47 | 1088 | 168 | 70 | 41.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_siren | hetalt | 97.7169 | 95.5357 | 100.0000 | 88.6049 | 107 | 5 | 107 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | het | 92.1663 | 93.3399 | 91.0220 | 88.6047 | 953 | 68 | 953 | 94 | 59 | 62.7660 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | homalt | 78.9120 | 75.7928 | 82.2989 | 88.6021 | 717 | 229 | 716 | 154 | 111 | 72.0779 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.6018 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.6018 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m1_e0 | * | 96.7936 | 95.4545 | 98.1707 | 88.6006 | 483 | 23 | 483 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.8207 | 97.3244 | 98.3221 | 88.5998 | 291 | 8 | 293 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e0 | * | 99.0408 | 98.9617 | 99.1200 | 88.5996 | 4956 | 52 | 4956 | 44 | 10 | 22.7273 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | het | 97.5662 | 98.0411 | 97.0958 | 88.5957 | 1001 | 20 | 1003 | 30 | 4 | 13.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4224 | 97.3958 | 99.4709 | 88.5938 | 187 | 5 | 188 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.7775 | 99.0196 | 98.5366 | 88.5921 | 202 | 2 | 202 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 88.5906 | 18 | 2 | 17 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 88.5906 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.1429 | 94.4444 | 100.0000 | 88.5906 | 34 | 2 | 34 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m0_e0 | het | 95.6303 | 96.7679 | 94.5192 | 88.5902 | 988 | 33 | 983 | 57 | 4 | 7.0175 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | * | 94.1283 | 95.9484 | 92.3759 | 88.5876 | 521 | 22 | 521 | 43 | 12 | 27.9070 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 93.6001 | 98.9748 | 88.7791 | 88.5873 | 1255 | 13 | 1258 | 159 | 10 | 6.2893 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1765 | 99.0599 | 99.2933 | 88.5872 | 843 | 8 | 843 | 6 | 4 | 66.6667 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.1978 | 94.7154 | 97.7273 | 88.5833 | 233 | 13 | 215 | 5 | 3 | 60.0000 | |