PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29801-29850 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 92.3351 | 94.1818 | 90.5594 | 88.7090 | 259 | 16 | 259 | 27 | 5 | 18.5185 | |
| bgallagher-sentieon | SNP | tv | map_l250_m1_e0 | * | 98.0805 | 98.4511 | 97.7128 | 88.7082 | 2606 | 41 | 2606 | 61 | 12 | 19.6721 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 91.1243 | 90.1639 | 92.1053 | 88.7073 | 55 | 6 | 70 | 6 | 1 | 16.6667 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | * | 98.8083 | 98.0102 | 99.6195 | 88.7052 | 4975 | 101 | 4975 | 19 | 9 | 47.3684 | |
| ckim-gatk | SNP | * | map_l150_m2_e1 | * | 80.8459 | 69.0003 | 97.6016 | 88.7044 | 22225 | 9985 | 22219 | 546 | 44 | 8.0586 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3666 | 99.2968 | 99.4366 | 88.7015 | 1412 | 10 | 1412 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 41.1765 | 88.7014 | 0 | 0 | 91 | 130 | 35 | 26.9231 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 88.7006 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 88.7006 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9442 | 98.3333 | 91.7808 | 88.6997 | 59 | 1 | 67 | 6 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | segdup | homalt | 99.7351 | 99.9348 | 99.5361 | 88.6997 | 10736 | 7 | 10729 | 50 | 50 | 100.0000 | |
| ckim-gatk | SNP | * | map_l150_m2_e0 | * | 80.7304 | 68.8246 | 97.6170 | 88.6980 | 21922 | 9930 | 21916 | 535 | 43 | 8.0374 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.1012 | 99.3902 | 94.9153 | 88.6973 | 163 | 1 | 112 | 6 | 5 | 83.3333 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2924 | 99.2063 | 99.3785 | 88.6959 | 1750 | 14 | 1759 | 11 | 11 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.4954 | 90.3509 | 99.0385 | 88.6957 | 206 | 22 | 206 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | het | 84.5932 | 97.4619 | 74.7264 | 88.6901 | 576 | 15 | 751 | 254 | 66 | 25.9843 | |
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 88.6878 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 88.6878 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| ckim-gatk | INDEL | * | map_l125_m0_e0 | homalt | 98.7741 | 99.2958 | 98.2578 | 88.6874 | 282 | 2 | 282 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | * | 97.0975 | 96.5318 | 97.6699 | 88.6863 | 501 | 18 | 503 | 12 | 1 | 8.3333 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.6667 | 82.9268 | 100.0000 | 88.6861 | 34 | 7 | 31 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | segdup | * | 99.5651 | 99.6059 | 99.5244 | 88.6856 | 19460 | 77 | 19460 | 93 | 33 | 35.4839 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | * | 90.4900 | 94.5977 | 86.7243 | 88.6844 | 823 | 47 | 1104 | 169 | 71 | 42.0118 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.9065 | 89.6373 | 94.2935 | 88.6839 | 346 | 40 | 347 | 21 | 14 | 66.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.0826 | 100.0000 | 98.1818 | 88.6831 | 108 | 0 | 108 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 56.8750 | 100.0000 | 39.7380 | 88.6830 | 1 | 0 | 182 | 276 | 65 | 23.5507 | |
| ltrigg-rtg1 | SNP | tv | segdup | het | 98.5379 | 99.3380 | 97.7505 | 88.6829 | 5252 | 35 | 5258 | 121 | 1 | 0.8264 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 87.4269 | 95.5834 | 80.5530 | 88.6814 | 2597 | 120 | 2622 | 633 | 90 | 14.2180 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 63.8821 | 48.3271 | 94.2029 | 88.6792 | 130 | 139 | 130 | 8 | 2 | 25.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 90.9091 | 100.0000 | 83.3333 | 88.6792 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | het | 88.8889 | 80.0000 | 100.0000 | 88.6792 | 24 | 6 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.6792 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | het | 70.8171 | 65.0000 | 77.7778 | 88.6792 | 13 | 7 | 14 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 20.0000 | 100.0000 | 11.1111 | 88.6792 | 2 | 0 | 2 | 16 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l125_m2_e1 | het | 81.5245 | 69.3666 | 98.8501 | 88.6777 | 13240 | 5847 | 13238 | 154 | 3 | 1.9481 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e1 | * | 99.0337 | 98.9362 | 99.1315 | 88.6771 | 5022 | 54 | 5022 | 44 | 10 | 22.7273 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.0370 | 96.2351 | 76.1733 | 88.6760 | 1457 | 57 | 1477 | 462 | 66 | 14.2857 | |
| ckim-vqsr | SNP | ti | map_l125_m2_e0 | het | 81.4281 | 69.2308 | 98.8426 | 88.6749 | 13068 | 5808 | 13066 | 153 | 3 | 1.9608 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7850 | 99.0930 | 98.4789 | 88.6741 | 1748 | 16 | 1748 | 27 | 12 | 44.4444 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | * | 96.5071 | 95.4649 | 97.5723 | 88.6736 | 842 | 40 | 844 | 21 | 5 | 23.8095 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.0352 | 93.9655 | 98.1982 | 88.6735 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | homalt | 78.8732 | 77.7778 | 80.0000 | 88.6731 | 28 | 8 | 28 | 7 | 7 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 88.6719 | 28 | 1 | 28 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 20.6897 | 88.6719 | 0 | 0 | 6 | 23 | 7 | 30.4348 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.1888 | 94.5312 | 100.0000 | 88.6704 | 121 | 7 | 121 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.6700 | 23 | 1 | 23 | 0 | 0 | ||