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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 581 582 583 584 585 586 587 588 589 ... 1720 1721 » 29201-29250 / 86044 show all
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.9223	96.9697	96.8750	89.1156	64	2	62	2	0	0.0000
ckim-dragen	INDEL	I6_15	map_l100_m1_e0	het	96.6102	96.6102	96.6102	89.1144	57	2	57	2	0	0.0000
qzeng-custom	INDEL	C1_5	HG002complexvar	homalt	0.0000	0.0000	96.4602	89.1137	0	0	109	4	0	0.0000
ghariani-varprowl	INDEL	I6_15	map_l100_m2_e1	*	72.3005	66.3793	79.3814	89.1134	77	39	77	20	16	80.0000
jpowers-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	17.7156	10.2151	66.6667	89.1129	19	167	18	9	9	100.0000
eyeh-varpipe	INDEL	D6_15	map_l150_m2_e1	het	95.1593	97.8723	92.5926	89.1129	46	1	50	4	4	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	95.3267	97.5124	93.2367	89.1110	196	5	193	14	1	7.1429
mlin-fermikit	INDEL	D1_5	map_l100_m1_e0	hetalt	63.7681	46.8085	100.0000	89.1089	22	25	22	0	0
qzeng-custom	SNP	ti	map_l250_m2_e0	homalt	73.9407	59.0623	98.8395	89.1089	1033	716	1022	12	11	91.6667
gduggal-snapvard	INDEL	D6_15	map_l150_m2_e0	het	79.0507	91.3043	69.6970	89.1089	42	4	69	30	19	63.3333
egarrison-hhga	SNP	*	segdup	homalt	99.7815	99.8976	99.6657	89.1087	10732	11	10732	36	36	100.0000
jli-custom	INDEL	I1_5	map_l150_m2_e0	*	98.8426	98.6513	99.0347	89.1016	512	7	513	5	2	40.0000
asubramanian-gatk	INDEL	I1_5	map_l150_m2_e1	homalt	97.2292	94.6078	100.0000	89.1011	193	11	194	0	0
astatham-gatk	INDEL	*	map_l125_m2_e0	*	96.5138	95.1275	97.9410	89.1008	2089	107	2093	44	9	20.4545
ckim-dragen	INDEL	*	map_l150_m2_e1	homalt	98.3678	98.1707	98.5656	89.0998	483	9	481	7	5	71.4286
jlack-gatk	INDEL	D6_15	map_l100_m0_e0	homalt	97.8723	95.8333	100.0000	89.0995	23	1	23	0	0
ndellapenna-hhga	INDEL	*	map_l100_m2_e1	hetalt	83.8498	75.7576	93.8776	89.0990	100	32	92	6	2	33.3333
ckim-gatk	INDEL	*	map_l100_m2_e1	*	97.0874	98.3759	95.8323	89.0990	3695	61	3702	161	20	12.4224
qzeng-custom	INDEL	D16_PLUS	map_l100_m2_e1	*	36.6856	81.4433	23.6749	89.0986	79	18	67	216	1	0.4630
dgrover-gatk	INDEL	*	map_l125_m1_e0	het	97.9822	98.0524	97.9120	89.0949	1309	26	1313	28	4	14.2857
hfeng-pmm1	SNP	ti	map_l250_m2_e1	het	98.7703	98.6056	98.9355	89.0938	3253	46	3253	35	8	22.8571
raldana-dualsentieon	INDEL	D1_5	map_l150_m0_e0	homalt	97.6190	96.4706	98.7952	89.0933	82	3	82	1	1	100.0000
gduggal-snapvard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	75.3471	93.5728	63.0638	89.0931	2475	170	2433	1425	52	3.6491
rpoplin-dv42	INDEL	I1_5	map_l150_m1_e0	het	97.7952	96.3211	99.3151	89.0923	288	11	290	2	1	50.0000
hfeng-pmm3	INDEL	*	map_l150_m0_e0	homalt	98.4894	99.3902	97.6048	89.0921	163	1	163	4	3	75.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	80.0000	100.0000	66.6667	89.0909	4	0	4	2	2	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	80.0000	100.0000	66.6667	89.0909	4	0	4	2	2	100.0000
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	91.5505	84.4177	100.0000	89.0909	5813	1073	12	0	0
mlin-fermikit	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	28.7770	17.3913	83.3333	89.0909	4	19	5	1	1	100.0000
ndellapenna-hhga	INDEL	I16_PLUS	map_l100_m2_e0	het	83.3333	83.3333	83.3333	89.0909	15	3	15	3	2	66.6667
gduggal-snapfb	INDEL	I6_15	map_l100_m0_e0	homalt	66.6667	50.0000	100.0000	89.0909	6	6	6	0	0
gduggal-snapfb	INDEL	I6_15	map_l150_m2_e0	het	81.4815	73.3333	91.6667	89.0909	11	4	11	1	1	100.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	9.8039	5.2083	83.3333	89.0909	10	182	10	2	2	100.0000
ghariani-varprowl	INDEL	I16_PLUS	map_l125_m2_e1	*	59.2593	53.3333	66.6667	89.0909	8	7	8	4	3	75.0000
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	0.0000	0.0000	100.0000	89.0909	0	0	6	0	0
eyeh-varpipe	INDEL	D6_15	map_l125_m2_e0	homalt	81.4394	83.3333	79.6296	89.0909	30	6	43	11	10	90.9091
dgrover-gatk	INDEL	*	map_l125_m2_e0	*	98.3167	98.3151	98.3182	89.0905	2159	37	2163	37	8	21.6216
ltrigg-rtg1	INDEL	D1_5	map_l150_m0_e0	homalt	98.8235	98.8235	98.8235	89.0886	84	1	84	1	1	100.0000
jlack-gatk	INDEL	*	map_l150_m2_e0	homalt	98.6472	98.5447	98.7500	89.0884	474	7	474	6	3	50.0000
eyeh-varpipe	SNP	*	segdup	homalt	99.9005	99.9348	99.8662	89.0870	10736	7	10453	14	14	100.0000
gduggal-snapplat	INDEL	D1_5	map_siren	*	85.8913	80.9294	91.5013	89.0859	2856	673	3273	304	56	18.4211
bgallagher-sentieon	INDEL	*	map_l125_m2_e0	het	97.9642	98.4184	97.5142	89.0844	1369	22	1373	35	5	14.2857
ckim-vqsr	INDEL	*	map_l150_m1_e0	homalt	98.9154	98.7013	99.1304	89.0840	456	6	456	4	2	50.0000
dgrover-gatk	INDEL	I6_15	map_l100_m2_e1	*	96.4912	94.8276	98.2143	89.0838	110	6	110	2	1	50.0000
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.1351	95.4545	96.8254	89.0815	63	3	61	2	0	0.0000
gduggal-snapvard	INDEL	C6_15	lowcmp_SimpleRepeat_diTR_11to50	het	0.0000	0.0000	46.0317	89.0815	0	0	87	102	40	39.2157
qzeng-custom	SNP	ti	map_l250_m2_e1	homalt	74.0705	59.2551	98.7643	89.0815	1050	722	1039	13	12	92.3077
ciseli-custom	INDEL	D1_5	map_l150_m1_e0	homalt	78.3964	77.1930	79.6380	89.0810	176	52	176	45	36	80.0000
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.1706	96.9697	95.3846	89.0756	64	2	62	3	0	0.0000
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	86.7838	93.8345	80.7186	89.0750	2222	146	2269	542	180	33.2103

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