PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28801-28850 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.4472 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | segdup | homalt | 99.8765 | 99.9382 | 99.8149 | 89.4470 | 3236 | 2 | 3236 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | * | 97.9068 | 97.5541 | 98.2622 | 89.4468 | 4467 | 112 | 4467 | 79 | 24 | 30.3797 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5366 | 99.0196 | 98.0583 | 89.4467 | 202 | 2 | 202 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | het | 96.5230 | 96.3606 | 96.6860 | 89.4465 | 1165 | 44 | 1167 | 40 | 4 | 10.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0000 | 93.4426 | 96.6102 | 89.4454 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 93.1730 | 96.8750 | 89.7436 | 89.4452 | 62 | 2 | 70 | 8 | 4 | 50.0000 | |
| gduggal-bwafb | SNP | * | segdup | homalt | 99.7625 | 99.6928 | 99.8322 | 89.4414 | 10710 | 33 | 10710 | 18 | 18 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | * | 97.1833 | 96.6423 | 97.7304 | 89.4395 | 3569 | 124 | 3574 | 83 | 16 | 19.2771 | |
| cchapple-custom | SNP | ti | map_l250_m0_e0 | homalt | 97.8972 | 96.1009 | 99.7619 | 89.4393 | 419 | 17 | 419 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | segdup | * | 99.6030 | 99.6793 | 99.5269 | 89.4388 | 27977 | 90 | 27977 | 133 | 40 | 30.0752 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.0685 | 99.0142 | 99.1228 | 89.4371 | 904 | 9 | 904 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 20.0000 | 89.4366 | 0 | 0 | 3 | 12 | 1 | 8.3333 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 97.2027 | 98.8950 | 95.5674 | 89.4362 | 537 | 6 | 539 | 25 | 3 | 12.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | het | 79.9285 | 66.9418 | 99.1669 | 89.4354 | 19626 | 9692 | 19640 | 165 | 44 | 26.6667 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e1 | het | 78.9116 | 95.0820 | 67.4419 | 89.4349 | 58 | 3 | 58 | 28 | 19 | 67.8571 | |
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | homalt | 49.9321 | 33.2850 | 99.8913 | 89.4326 | 919 | 1842 | 919 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | hetalt | 95.4545 | 93.7500 | 97.2222 | 89.4325 | 105 | 7 | 105 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | het | 97.6106 | 96.7991 | 98.4358 | 89.4308 | 877 | 29 | 881 | 14 | 5 | 35.7143 | |
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | het | 96.5517 | 96.3626 | 96.7416 | 89.4306 | 1722 | 65 | 1722 | 58 | 11 | 18.9655 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | homalt | 85.5172 | 76.8595 | 96.3731 | 89.4304 | 186 | 56 | 186 | 7 | 6 | 85.7143 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6190 | 96.0938 | 99.1935 | 89.4288 | 123 | 5 | 123 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l150_m2_e0 | * | 79.8775 | 67.9260 | 96.9327 | 89.4279 | 7713 | 3642 | 7711 | 244 | 8 | 3.2787 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | homalt | 88.3005 | 79.1391 | 99.8607 | 89.4279 | 2151 | 567 | 2150 | 3 | 3 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l150_m1_e0 | het | 83.1414 | 73.6683 | 95.4104 | 89.4270 | 5117 | 1829 | 5114 | 246 | 203 | 82.5203 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1238 | 99.1238 | 99.1238 | 89.4268 | 905 | 8 | 905 | 8 | 7 | 87.5000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | homalt | 87.2327 | 78.2258 | 98.5836 | 89.4248 | 291 | 81 | 348 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l150_m2_e0 | het | 98.1776 | 98.0132 | 98.3425 | 89.4239 | 888 | 18 | 890 | 15 | 4 | 26.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.4231 | 44 | 1 | 44 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | het | 62.0690 | 50.0000 | 81.8182 | 89.4231 | 8 | 8 | 9 | 2 | 1 | 50.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1997 | 98.5761 | 97.8261 | 89.4229 | 900 | 13 | 900 | 20 | 13 | 65.0000 | |
| gduggal-bwavard | INDEL | I1_5 | segdup | homalt | 96.3005 | 93.6575 | 99.0971 | 89.4222 | 443 | 30 | 439 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | * | 91.5570 | 95.1115 | 88.2586 | 89.4208 | 2004 | 103 | 2007 | 267 | 71 | 26.5918 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 89.4207 | 42 | 2 | 42 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 95.5921 | 97.9143 | 93.3775 | 89.4196 | 845 | 18 | 846 | 60 | 5 | 8.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | het | 95.2520 | 94.7686 | 95.7404 | 89.4183 | 471 | 26 | 472 | 21 | 3 | 14.2857 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 87.1795 | 77.2727 | 100.0000 | 89.4180 | 34 | 10 | 20 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | het | 80.1160 | 67.2065 | 99.1643 | 89.4169 | 19920 | 9720 | 19934 | 168 | 44 | 26.1905 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | homalt | 73.7841 | 58.5687 | 99.6795 | 89.4166 | 311 | 220 | 311 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | homalt | 74.0396 | 58.8889 | 99.6865 | 89.4161 | 318 | 222 | 318 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | het | 95.6522 | 92.9577 | 98.5075 | 89.4155 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.0165 | 87.8049 | 78.7234 | 89.4144 | 36 | 5 | 37 | 10 | 7 | 70.0000 | |
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | homalt | 95.4296 | 91.9014 | 99.2395 | 89.4122 | 261 | 23 | 261 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 89.4118 | 4 | 4 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0038 | 68.1273 | 96.8955 | 89.4103 | 7836 | 3666 | 7834 | 251 | 9 | 3.5857 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.9292 | 85.2071 | 95.2055 | 89.4101 | 432 | 75 | 417 | 21 | 10 | 47.6190 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4861 | 97.9849 | 98.9924 | 89.4091 | 778 | 16 | 786 | 8 | 7 | 87.5000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | * | 67.9623 | 66.1818 | 69.8413 | 89.4073 | 182 | 93 | 176 | 76 | 63 | 82.8947 | |
| gduggal-bwavard | INDEL | * | map_l100_m1_e0 | het | 89.9219 | 98.1208 | 82.9876 | 89.4070 | 2193 | 42 | 2200 | 451 | 184 | 40.7982 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | * | 98.1725 | 98.5597 | 97.7884 | 89.4056 | 2874 | 42 | 2874 | 65 | 13 | 20.0000 | |