PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28751-28800 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.4737 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 89.4737 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.4737 | 36 | 1 | 36 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 89.4737 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 89.4737 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 40.0000 | 50.0000 | 33.3333 | 89.4737 | 1 | 1 | 2 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m0_e0 | homalt | 83.3333 | 83.3333 | 83.3333 | 89.4737 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 89.4737 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 89.4737 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 89.4737 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 89.4737 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 89.4737 | 18 | 1 | 18 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 88.8889 | 80.0000 | 100.0000 | 89.4737 | 4 | 1 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.4737 | 2 | 1 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 2 | 2 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 89.4737 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m2_e0 | * | 98.4835 | 98.8332 | 98.1363 | 89.4731 | 7793 | 92 | 7793 | 148 | 32 | 21.6216 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | * | 94.5000 | 94.2121 | 94.7896 | 89.4714 | 6804 | 418 | 6804 | 374 | 175 | 46.7914 | |
| jli-custom | INDEL | * | map_l150_m2_e1 | het | 98.1579 | 97.9437 | 98.3731 | 89.4713 | 905 | 19 | 907 | 15 | 4 | 26.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6959 | 98.1481 | 97.2477 | 89.4686 | 106 | 2 | 106 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | het | 80.0000 | 88.1356 | 73.2394 | 89.4659 | 52 | 7 | 52 | 19 | 15 | 78.9474 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.0992 | 93.9394 | 98.3607 | 89.4646 | 62 | 4 | 60 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.4619 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | segdup | homalt | 99.8611 | 99.9074 | 99.8149 | 89.4615 | 3235 | 3 | 3235 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | het | 98.1509 | 97.5904 | 98.7179 | 89.4595 | 81 | 2 | 77 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.4578 | 35 | 1 | 35 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 93.8042 | 89.3701 | 98.7013 | 89.4569 | 454 | 54 | 456 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.4569 | 33 | 1 | 33 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | het | 95.2612 | 94.8819 | 95.6436 | 89.4550 | 482 | 26 | 483 | 22 | 3 | 13.6364 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 91.3204 | 98.6464 | 85.0073 | 89.4535 | 583 | 8 | 584 | 103 | 5 | 4.8544 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | hetalt | 74.2857 | 60.4651 | 96.2963 | 89.4531 | 26 | 17 | 26 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6836 | 99.1202 | 98.2507 | 89.4526 | 338 | 3 | 337 | 6 | 3 | 50.0000 | |
| anovak-vg | INDEL | * | map_l125_m2_e0 | het | 71.0853 | 69.0870 | 73.2026 | 89.4523 | 961 | 430 | 1008 | 369 | 100 | 27.1003 | |
| astatham-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.9858 | 99.1870 | 98.7854 | 89.4512 | 488 | 4 | 488 | 6 | 4 | 66.6667 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 86.8775 | 97.0427 | 78.6399 | 89.4490 | 886 | 27 | 902 | 245 | 33 | 13.4694 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | het | 97.5486 | 96.7532 | 98.3571 | 89.4487 | 894 | 30 | 898 | 15 | 6 | 40.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6959 | 98.1481 | 97.2477 | 89.4482 | 106 | 2 | 106 | 3 | 0 | 0.0000 | |
| jli-custom | SNP | tv | map_l250_m0_e0 | het | 96.2433 | 94.0559 | 98.5348 | 89.4472 | 538 | 34 | 538 | 8 | 2 | 25.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | hetalt | 88.6364 | 79.5918 | 100.0000 | 89.4472 | 39 | 10 | 42 | 0 | 0 | ||