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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 571 572 573 574 575 576 577 578 579 ... 1720 1721 » 28701-28750 / 86044 show all
hfeng-pmm3	SNP	*	segdup	*	99.7170	99.8183	99.6159	89.5042	28016	51	28010	108	8	7.4074
ndellapenna-hhga	INDEL	D6_15	map_l125_m2_e1	*	91.4293	90.6250	92.2481	89.5037	116	12	119	10	5	50.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4336	99.4962	99.3711	89.5036	790	4	790	5	5	100.0000
hfeng-pmm2	SNP	ti	map_l250_m1_e0	*	98.7163	99.0828	98.3525	89.4985	4537	42	4537	76	9	11.8421
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.4326	95.5919	99.3455	89.4983	759	35	759	5	5	100.0000
ciseli-custom	INDEL	D1_5	map_l100_m0_e0	*	77.3981	72.8853	82.5065	89.4982	629	234	632	134	63	47.0149
ckim-isaac	INDEL	I1_5	map_l125_m2_e1	het	86.2222	76.3780	98.9796	89.4962	388	120	388	4	1	25.0000
astatham-gatk	INDEL	D6_15	map_l150_m1_e0	homalt	98.0392	96.1538	100.0000	89.4958	25	1	25	0	0
raldana-dualsentieon	SNP	ti	map_l250_m2_e0	het	97.5401	98.0947	96.9918	89.4930	3192	62	3192	99	2	2.0202
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.1788	98.8665	99.4930	89.4926	785	9	785	4	4	100.0000
cchapple-custom	INDEL	I1_5	map_l150_m1_e0	het	94.8942	94.9833	94.8052	89.4916	284	15	292	16	2	12.5000
hfeng-pmm1	INDEL	I1_5	map_l150_m2_e0	*	97.9658	97.3025	98.6381	89.4909	505	14	507	7	2	28.5714
rpoplin-dv42	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	89.4904	33	1	33	0	0
ckim-dragen	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	97.7221	97.5000	97.9452	89.4888	156	4	143	3	1	33.3333
qzeng-custom	SNP	tv	segdup	homalt	99.1318	98.9500	99.3142	89.4844	3204	34	3186	22	21	95.4545
gduggal-snapplat	SNP	tv	map_l150_m0_e0	*	88.3530	84.1399	93.0103	89.4841	3512	662	3513	264	134	50.7576
ltrigg-rtg1	INDEL	D1_5	map_l250_m2_e0	het	93.3921	87.6033	100.0000	89.4839	106	15	108	0	0
ndellapenna-hhga	INDEL	D16_PLUS	map_l100_m2_e0	het	85.8721	89.5833	82.4561	89.4834	43	5	47	10	5	50.0000
astatham-gatk	INDEL	*	map_l150_m2_e0	homalt	99.0654	99.1684	98.9627	89.4829	477	4	477	5	3	60.0000
bgallagher-sentieon	INDEL	D1_5	map_l150_m1_e0	het	97.7580	99.1701	96.3855	89.4826	478	4	480	18	3	16.6667
raldana-dualsentieon	SNP	*	map_l250_m2_e1	het	97.5147	97.6444	97.3854	89.4825	5140	124	5140	138	3	2.1739
ndellapenna-hhga	INDEL	*	map_l100_m2_e0	hetalt	83.7547	75.2000	94.5055	89.4798	94	31	86	5	2	40.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.6744	97.2222	98.1308	89.4789	105	3	105	2	0	0.0000
qzeng-custom	SNP	*	map_l150_m1_e0	het	81.0937	70.5218	95.3942	89.4771	13622	5694	13504	652	548	84.0491
gduggal-snapplat	INDEL	*	map_l125_m1_e0	homalt	84.6016	75.1366	96.7949	89.4755	550	182	604	20	0	0.0000
ckim-vqsr	INDEL	*	map_l100_m2_e1	*	97.1482	96.5389	97.7652	89.4752	3626	130	3631	83	16	19.2771
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
egarrison-hhga	INDEL	I16_PLUS	map_l150_m2_e0	*	76.1905	72.7273	80.0000	89.4737	8	3	8	2	1	50.0000
egarrison-hhga	INDEL	I16_PLUS	map_l150_m2_e1	*	76.1905	72.7273	80.0000	89.4737	8	3	8	2	1	50.0000
egarrison-hhga	INDEL	I6_15	map_l125_m2_e1	hetalt	100.0000	100.0000	100.0000	89.4737	8	0	8	0	0
eyeh-varpipe	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	0.0000	0.0000	100.0000	89.4737	0	0	6	0	0
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
ciseli-custom	INDEL	D16_PLUS	map_l100_m2_e0	*	44.1674	34.4444	61.5385	89.4737	31	59	32	20	14	70.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
bgallagher-sentieon	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
asubramanian-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
asubramanian-gatk	INDEL	D6_15	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	89.4737	5	0	6	0	0
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	70.5882	75.0000	66.6667	89.4737	6	2	4	2	2	100.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0

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