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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 570 571 572 573 574 575 576 577 578 ... 1720 1721 » 28651-28700 / 86044 show all
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	67.0378	96.3964	51.3872	89.5473	428	16	426	403	27	6.6998
bgallagher-sentieon	SNP	ti	map_l250_m2_e0	*	98.6664	98.9816	98.3532	89.5470	4957	51	4957	83	19	22.8916
jlack-gatk	SNP	tv	map_l150_m0_e0	het	89.8651	98.2765	82.7801	89.5464	2794	49	2793	581	34	5.8520
gduggal-snapvard	INDEL	C6_15	*	homalt	0.0000	0.0000	69.1489	89.5439	0	0	65	29	21	72.4138
jli-custom	INDEL	I16_PLUS	map_l100_m1_e0	het	88.2353	83.3333	93.7500	89.5425	15	3	15	1	0	0.0000
jmaeng-gatk	SNP	tv	map_l150_m2_e0	*	79.9418	68.0934	96.7823	89.5425	7732	3623	7730	257	7	2.7237
gduggal-bwavard	INDEL	D6_15	map_l100_m2_e0	*	69.2012	67.4242	71.0744	89.5419	178	86	172	70	58	82.8571
hfeng-pmm1	INDEL	I1_5	map_l150_m2_e1	*	98.0120	97.3635	98.6692	89.5407	517	14	519	7	2	28.5714
hfeng-pmm3	INDEL	I1_5	map_l150_m2_e0	het	97.7251	97.0874	98.3713	89.5400	300	9	302	5	0	0.0000
bgallagher-sentieon	SNP	*	map_l250_m2_e1	*	98.4903	98.8356	98.1475	89.5400	7894	93	7894	149	32	21.4765
cchapple-custom	INDEL	C16_PLUS	HG002complexvar	*	0.0000	0.0000	89.8305	89.5390	0	0	53	6	5	83.3333
ckim-vqsr	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	89.5385	67	0	67	1	1	100.0000
ckim-vqsr	INDEL	I6_15	segdup	hetalt	97.7273	95.5556	100.0000	89.5377	43	2	43	0	0
ckim-gatk	INDEL	I6_15	segdup	hetalt	97.7273	95.5556	100.0000	89.5377	43	2	43	0	0
dgrover-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.5365	3236	2	3236	6	6	100.0000
gduggal-snapvard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	35.8318	82.3529	22.8972	89.5355	182	39	196	660	17	2.5758
ciseli-custom	INDEL	D1_5	map_l150_m2_e1	homalt	78.5276	77.4194	79.6680	89.5354	192	56	192	49	40	81.6327
egarrison-hhga	INDEL	D6_15	map_l125_m2_e1	het	95.4357	97.1831	93.7500	89.5288	69	2	75	5	4	80.0000
qzeng-custom	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	0.0000	0.0000	10.0000	89.5288	0	0	4	36	0	0.0000
qzeng-custom	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	0.0000	0.0000	10.0000	89.5288	0	0	4	36	0	0.0000
ckim-isaac	INDEL	I1_5	map_l125_m2_e0	het	86.0068	76.0563	98.9529	89.5285	378	119	378	4	1	25.0000
ltrigg-rtg2	SNP	ti	map_l250_m0_e0	homalt	99.4273	99.5413	99.3135	89.5279	434	2	434	3	3	100.0000
gduggal-snapvard	INDEL	C6_15	lowcmp_SimpleRepeat_diTR_11to50	*	0.0000	0.0000	47.2362	89.5263	0	0	94	105	43	40.9524
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	97.6190	97.6190	97.6190	89.5262	41	1	41	1	0	0.0000
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	93.1982	95.0000	91.4634	89.5261	684	36	750	70	22	31.4286
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	96.2617	95.3704	97.1698	89.5257	103	5	103	3	1	33.3333
jlack-gatk	INDEL	*	map_l100_m0_e0	*	93.6372	97.7607	89.8474	89.5254	1528	35	1531	173	12	6.9364
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	het	65.6716	66.6667	64.7059	89.5246	68	34	77	42	4	9.5238
cchapple-custom	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	0.0000	0.0000	45.4545	89.5238	0	0	5	6	1	16.6667
gduggal-snapvard	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	0.0000	0.0000	45.4545	89.5238	0	0	80	96	28	29.1667
jmaeng-gatk	SNP	tv	map_l150_m2_e1	*	80.0731	68.3012	96.7480	89.5225	7856	3646	7854	264	8	3.0303
ltrigg-rtg2	INDEL	D1_5	map_l250_m1_e0	het	96.2617	92.7928	100.0000	89.5210	103	8	105	0	0
ltrigg-rtg2	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	0.0000	0.0000	100.0000	89.5197	0	0	24	0	0
anovak-vg	INDEL	*	map_l125_m2_e1	het	70.9268	68.8210	73.1655	89.5197	969	439	1017	373	101	27.0777
gduggal-bwaplat	INDEL	D1_5	map_siren	*	87.3512	77.9824	99.2785	89.5187	2752	777	2752	20	7	35.0000
raldana-dualsentieon	INDEL	*	map_l150_m0_e0	homalt	97.8462	96.9512	98.7578	89.5182	159	5	159	2	2	100.0000
ltrigg-rtg2	SNP	tv	segdup	homalt	99.6765	99.9382	99.4161	89.5171	3236	2	3235	19	19	100.0000
qzeng-custom	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	0.0000	0.0000	15.3846	89.5161	0	0	2	11	0	0.0000
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	42.4779	27.5862	92.3077	89.5161	24	63	24	2	1	50.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	92.8571	86.6667	100.0000	89.5161	13	2	13	0	0
ghariani-varprowl	INDEL	D6_15	map_l100_m1_e0	het	77.2586	98.4127	63.5897	89.5161	124	2	124	71	65	91.5493
hfeng-pmm1	INDEL	D6_15	map_l125_m2_e0	het	97.1014	94.3662	100.0000	89.5149	67	4	67	0	0
gduggal-bwafb	INDEL	*	map_l150_m2_e1	*	96.4212	95.3440	97.5230	89.5147	1372	67	1378	35	8	22.8571
gduggal-bwavard	INDEL	D1_5	map_l100_m0_e0	het	89.9509	98.4772	82.7834	89.5125	582	9	577	120	17	14.1667
qzeng-custom	INDEL	I16_PLUS	map_l125_m1_e0	*	68.2927	66.6667	70.0000	89.5105	10	5	21	9	0	0.0000
dgrover-gatk	INDEL	I6_15	map_l100_m2_e1	het	95.8678	95.0820	96.6667	89.5105	58	3	58	2	1	50.0000
cchapple-custom	INDEL	I6_15	map_l125_m1_e0	homalt	100.0000	100.0000	100.0000	89.5105	15	0	15	0	0
ckim-isaac	INDEL	D1_5	map_l125_m0_e0	*	77.3562	63.7097	98.4424	89.5098	316	180	316	5	1	20.0000
gduggal-bwafb	INDEL	*	map_l150_m2_e0	*	96.4133	95.3125	97.5398	89.5080	1342	66	1348	34	8	23.5294
gduggal-snapfb	INDEL	D6_15	segdup	het	82.4566	71.7391	96.9388	89.5075	66	26	95	3	3	100.0000

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