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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 568 569 570 571 572 573 574 575 576 ... 1720 1721 » 28551-28600 / 86044 show all
asubramanian-gatk	SNP	ti	map_l100_m2_e0	hetalt	53.6585	36.6667	100.0000	89.6226	11	19	11	0	0
jmaeng-gatk	INDEL	*	map_l150_m2_e0	homalt	98.6416	98.1289	99.1597	89.6206	472	9	472	4	3	75.0000
gduggal-snapfb	INDEL	*	map_l125_m2_e0	homalt	97.0861	96.0682	98.1258	89.6192	733	30	733	14	9	64.2857
ltrigg-rtg1	INDEL	D1_5	map_l250_m2_e1	het	93.4498	87.7049	100.0000	89.6190	107	15	109	0	0
ghariani-varprowl	INDEL	D1_5	map_l100_m0_e0	het	89.8148	98.4772	82.5532	89.6186	582	9	582	123	22	17.8862
egarrison-hhga	SNP	*	segdup	het	99.4921	99.5438	99.4404	89.6178	17238	79	17238	97	4	4.1237
ghariani-varprowl	SNP	tv	map_l250_m2_e0	homalt	97.8308	96.2647	99.4487	89.6177	902	35	902	5	1	20.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e0	het	97.5224	99.2218	95.8801	89.6170	510	4	512	22	2	9.0909
eyeh-varpipe	INDEL	D6_15	map_l150_m1_e0	het	95.4545	100.0000	91.3043	89.6163	39	0	42	4	4	100.0000
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.5501	95.9474	99.2072	89.6154	876	37	876	7	6	85.7143
gduggal-bwavard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	81.2556	88.9456	74.7895	89.6153	1569	195	1510	509	141	27.7014
gduggal-snapvard	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	51.3219	83.3333	37.0787	89.6149	35	7	33	56	0	0.0000
gduggal-snapplat	INDEL	*	map_siren	*	79.6077	71.8219	89.2868	89.6136	5322	2088	5709	685	78	11.3869
dgrover-gatk	INDEL	I1_5	map_l100_m2_e1	hetalt	97.7273	95.5556	100.0000	89.6135	43	2	43	0	0
anovak-vg	INDEL	D1_5	map_l150_m1_e0	*	81.6618	83.6820	79.7368	89.6132	600	117	606	154	60	38.9610
bgallagher-sentieon	SNP	ti	map_l250_m2_e1	*	98.6646	98.9756	98.3555	89.6132	5024	52	5024	84	19	22.6190
cchapple-custom	INDEL	I1_5	map_l150_m2_e1	*	96.3108	96.0452	96.5779	89.6130	510	21	508	18	3	16.6667
astatham-gatk	INDEL	D1_5	map_l150_m1_e0	*	96.6476	96.3738	96.9231	89.6121	691	26	693	22	4	18.1818
jli-custom	INDEL	I1_5	map_l150_m2_e1	het	98.5702	97.7918	99.3610	89.6117	310	7	311	2	0	0.0000
egarrison-hhga	INDEL	*	map_l100_m2_e0	hetalt	82.9138	72.0000	97.7273	89.6104	90	35	86	2	1	50.0000
gduggal-bwafb	INDEL	D1_5	map_l150_m1_e0	homalt	98.6784	98.2456	99.1150	89.6092	224	4	224	2	2	100.0000
gduggal-snapfb	INDEL	I1_5	map_l125_m2_e1	homalt	98.6912	99.1254	98.2609	89.6084	340	3	339	6	3	50.0000
cchapple-custom	SNP	*	map_l250_m1_e0	*	96.0890	95.7906	96.3892	89.6069	6918	304	6914	259	62	23.9382
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	94.7350	92.2280	97.3822	89.6054	356	30	372	10	1	10.0000
cchapple-custom	INDEL	D1_5	map_l150_m0_e0	homalt	96.3707	94.1176	98.7342	89.6053	80	5	78	1	1	100.0000
ckim-dragen	INDEL	D1_5	map_l125_m0_e0	het	95.6942	96.8116	94.6023	89.6043	334	11	333	19	1	5.2632
ckim-vqsr	SNP	tv	map_l125_m2_e0	*	69.7523	53.9693	98.5819	89.6043	8899	7590	8898	128	1	0.7813
qzeng-custom	INDEL	C1_5	HG002complexvar	het	80.8034	71.4286	93.0108	89.6031	5	2	173	13	1	7.6923
jmaeng-gatk	INDEL	I1_5	map_l100_m1_e0	het	96.8346	98.0695	95.6305	89.6028	762	15	766	35	1	2.8571
anovak-vg	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	73.8636	71.4286	76.4706	89.6024	25	10	26	8	5	62.5000
ciseli-custom	INDEL	I6_15	segdup	*	43.2432	32.0000	66.6667	89.6021	56	119	54	27	25	92.5926
qzeng-custom	SNP	ti	map_l150_m1_e0	het	79.9066	68.7551	95.3758	89.6012	8505	3865	8477	411	348	84.6715
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.9011	98.5761	99.2282	89.6010	900	13	900	7	6	85.7143
ckim-vqsr	SNP	tv	map_l125_m2_e1	*	69.8938	54.1334	98.6002	89.6003	9017	7640	9016	128	1	0.7813
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	homalt	14.2857	100.0000	7.6923	89.6000	6	0	6	72	0	0.0000
ltrigg-rtg2	INDEL	D6_15	segdup	homalt	98.9899	98.0000	100.0000	89.5966	49	1	49	0	0
gduggal-snapfb	INDEL	D1_5	map_l125_m2_e1	homalt	98.3846	98.1183	98.6523	89.5962	365	7	366	5	3	60.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	96.3855	95.2381	97.5610	89.5939	40	2	40	1	0	0.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	96.3855	95.2381	97.5610	89.5939	40	2	40	1	0	0.0000
hfeng-pmm3	INDEL	I1_5	map_l150_m2_e1	het	97.7828	97.1609	98.4127	89.5937	308	9	310	5	0	0.0000
mlin-fermikit	INDEL	D1_5	map_l100_m2_e0	hetalt	62.8571	45.8333	100.0000	89.5928	22	26	23	0	0
ltrigg-rtg1	INDEL	D16_PLUS	map_l125_m1_e0	*	90.1158	85.1852	95.6522	89.5928	23	4	22	1	0	0.0000
ltrigg-rtg2	INDEL	C16_PLUS	HG002complexvar	*	0.0000	0.0000	94.2029	89.5928	0	0	65	4	3	75.0000
raldana-dualsentieon	SNP	ti	map_l250_m2_e1	het	97.5433	98.0903	97.0024	89.5913	3236	63	3236	100	2	2.0000
ndellapenna-hhga	INDEL	D6_15	map_l150_m2_e0	homalt	96.4286	96.4286	96.4286	89.5911	27	1	27	1	1	100.0000
qzeng-custom	INDEL	I16_PLUS	map_l125_m2_e0	*	66.6667	66.6667	66.6667	89.5899	10	5	22	11	0	0.0000
ckim-vqsr	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	89.5899	33	1	33	0	0
bgallagher-sentieon	SNP	ti	segdup	*	99.5103	99.8567	99.1663	89.5899	19509	28	19507	164	6	3.6585
ckim-gatk	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	89.5899	33	1	33	0	0
asubramanian-gatk	INDEL	*	map_l100_m1_e0	het	89.5146	84.5190	95.1378	89.5888	1889	346	1898	97	13	13.4021

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