PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28451-28500 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.6956 | 44 | 1 | 44 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_siren | het | 85.7607 | 82.4769 | 89.3168 | 89.6940 | 1878 | 399 | 2157 | 258 | 42 | 16.2791 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 95.6522 | 95.8333 | 95.4717 | 89.6927 | 253 | 11 | 253 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e1 | * | 95.9707 | 95.2727 | 96.6790 | 89.6919 | 262 | 13 | 262 | 9 | 2 | 22.2222 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 95.5127 | 98.1481 | 93.0151 | 89.6916 | 795 | 15 | 799 | 60 | 4 | 6.6667 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | * | 86.5802 | 95.6764 | 79.0634 | 89.6914 | 686 | 31 | 861 | 228 | 53 | 23.2456 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.0232 | 87.7828 | 92.3810 | 89.6907 | 194 | 27 | 194 | 16 | 9 | 56.2500 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | homalt | 98.1818 | 98.7805 | 97.5904 | 89.6894 | 162 | 2 | 162 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 4.8193 | 89.6894 | 0 | 0 | 4 | 79 | 28 | 35.4430 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 66.6667 | 66.6667 | 66.6667 | 89.6875 | 10 | 5 | 22 | 11 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | segdup | * | 99.6754 | 99.8157 | 99.5355 | 89.6871 | 19501 | 36 | 19499 | 91 | 9 | 9.8901 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | * | 88.8889 | 83.0189 | 95.6522 | 89.6861 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 97.7938 | 98.1855 | 97.4052 | 89.6850 | 487 | 9 | 488 | 13 | 3 | 23.0769 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | * | 97.3484 | 97.8435 | 96.8583 | 89.6841 | 4900 | 108 | 4902 | 159 | 19 | 11.9497 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e0 | homalt | 98.5417 | 98.3368 | 98.7474 | 89.6834 | 473 | 8 | 473 | 6 | 3 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | * | 95.4183 | 94.6640 | 96.1847 | 89.6830 | 479 | 27 | 479 | 19 | 5 | 26.3158 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 98.0676 | 98.0645 | 98.0707 | 89.6815 | 304 | 6 | 305 | 6 | 2 | 33.3333 | |
| qzeng-custom | SNP | tv | map_l250_m2_e0 | homalt | 76.0969 | 62.0064 | 98.4746 | 89.6799 | 581 | 356 | 581 | 9 | 9 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | hetalt | 80.0000 | 68.2927 | 96.5517 | 89.6797 | 28 | 13 | 28 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 80.0000 | 68.2927 | 96.5517 | 89.6797 | 28 | 13 | 28 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | homalt | 97.1279 | 96.1240 | 98.1530 | 89.6772 | 744 | 30 | 744 | 14 | 9 | 64.2857 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.4630 | 99.0421 | 95.9335 | 89.6756 | 517 | 5 | 519 | 22 | 2 | 9.0909 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 84.1998 | 75.5674 | 95.0586 | 89.6740 | 1132 | 366 | 1135 | 59 | 25 | 42.3729 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m0_e0 | het | 97.4359 | 95.0000 | 100.0000 | 89.6739 | 19 | 1 | 19 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.6965 | 89.5833 | 83.9898 | 89.6733 | 645 | 75 | 661 | 126 | 8 | 6.3492 | |
| hfeng-pmm2 | INDEL | * | map_l125_m0_e0 | * | 97.4196 | 98.2993 | 96.5556 | 89.6718 | 867 | 15 | 869 | 31 | 6 | 19.3548 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | homalt | 99.6784 | 99.5731 | 99.7840 | 89.6709 | 933 | 4 | 924 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.1348 | 47.7733 | 97.5410 | 89.6698 | 118 | 129 | 119 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e1 | homalt | 97.8518 | 96.3002 | 99.4541 | 89.6696 | 911 | 35 | 911 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | het | 94.9495 | 95.9184 | 94.0000 | 89.6694 | 47 | 2 | 47 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.6679 | 28 | 1 | 28 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m1_e0 | * | 72.1633 | 71.2329 | 73.1183 | 89.6667 | 52 | 21 | 68 | 25 | 15 | 60.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 2.9412 | 89.6657 | 0 | 0 | 1 | 33 | 2 | 6.0606 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | het | 93.8879 | 94.3218 | 93.4579 | 89.6652 | 299 | 18 | 300 | 21 | 3 | 14.2857 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | * | 96.9396 | 97.3501 | 96.5326 | 89.6646 | 698 | 19 | 696 | 25 | 3 | 12.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8323 | 77.7778 | 90.9091 | 89.6644 | 70 | 20 | 70 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | * | 93.7753 | 95.1613 | 92.4290 | 89.6642 | 295 | 15 | 293 | 24 | 5 | 20.8333 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 89.6641 | 40 | 2 | 40 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m1_e0 | * | 95.5601 | 95.6177 | 95.5026 | 89.6633 | 2531 | 116 | 2527 | 119 | 24 | 20.1681 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.4741 | 98.3740 | 98.5743 | 89.6632 | 484 | 8 | 484 | 7 | 4 | 57.1429 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3193 | 96.8692 | 97.7737 | 89.6605 | 526 | 17 | 527 | 12 | 2 | 16.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 90.3207 | 83.7349 | 98.0309 | 89.6582 | 695 | 135 | 697 | 14 | 1 | 7.1429 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 89.6552 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.6552 | 42 | 3 | 42 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_siren | homalt | 37.0370 | 23.8095 | 83.3333 | 89.6552 | 5 | 16 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.6552 | 6 | 0 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 89.6552 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 89.6552 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 93.0501 | 95.7746 | 90.4762 | 89.6552 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 40.0000 | 50.0000 | 33.3333 | 89.6552 | 1 | 1 | 1 | 2 | 1 | 50.0000 | |