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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 555 556 557 558 559 560 561 562 563 ... 1720 1721 » 27901-27950 / 86044 show all
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	95.8714	96.9697	94.7977	90.1143	160	5	164	9	1	11.1111
ghariani-varprowl	INDEL	D6_15	map_l100_m2_e0	het	77.5758	97.7099	64.3216	90.1143	128	3	128	71	65	91.5493
egarrison-hhga	INDEL	D6_15	segdup	hetalt	72.7273	57.1429	100.0000	90.1141	28	21	26	0	0
ckim-dragen	INDEL	I6_15	map_l100_m2_e1	het	96.7213	96.7213	96.7213	90.1135	59	2	59	2	0	0.0000
astatham-gatk	INDEL	D1_5	map_l150_m2_e1	*	96.5155	96.0154	97.0207	90.1102	747	31	749	23	5	21.7391
eyeh-varpipe	INDEL	I6_15	map_l250_m2_e0	homalt	100.0000	100.0000	100.0000	90.1099	3	0	9	0	0
egarrison-hhga	INDEL	I16_PLUS	map_l125_m2_e0	het	77.7778	77.7778	77.7778	90.1099	7	2	7	2	1	50.0000
qzeng-custom	INDEL	C6_15	HG002complexvar	het	97.2222	100.0000	94.5946	90.1070	4	0	35	2	0	0.0000
asubramanian-gatk	INDEL	I6_15	map_l100_m1_e0	het	92.0958	88.1356	96.4286	90.1060	52	7	54	2	1	50.0000
asubramanian-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	78.3505	92.6829	67.8571	90.1060	38	3	38	18	0	0.0000
gduggal-bwavard	INDEL	*	map_l100_m2_e1	het	89.9944	98.0794	83.1408	90.1047	2298	45	2303	467	194	41.5418
gduggal-bwafb	INDEL	D16_PLUS	map_l100_m0_e0	*	72.3404	60.7143	89.4737	90.1042	17	11	17	2	2	100.0000
ckim-gatk	SNP	*	map_l100_m2_e0	hetalt	78.8732	66.6667	96.5517	90.1024	28	14	28	1	1	100.0000
ckim-gatk	SNP	tv	map_l100_m2_e0	hetalt	78.8732	66.6667	96.5517	90.1024	28	14	28	1	1	100.0000
gduggal-snapvard	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_51to200	het	0.0000	0.0000	3.4483	90.1024	0	0	1	28	2	7.1429
astatham-gatk	INDEL	D1_5	map_l150_m2_e0	*	96.6463	96.1992	97.0976	90.1019	734	29	736	22	4	18.1818
gduggal-bwavard	INDEL	D16_PLUS	map_siren	homalt	70.3704	55.8824	95.0000	90.0990	19	15	19	1	1	100.0000
qzeng-custom	INDEL	I6_15	map_l125_m0_e0	homalt	58.3333	50.0000	70.0000	90.0990	3	3	7	3	0	0.0000
gduggal-snapvard	INDEL	D1_5	map_l150_m2_e0	*	87.0891	95.8060	79.8261	90.0965	731	32	918	232	55	23.7069
gduggal-bwavard	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	0.0000	0.0000	62.3288	90.0950	0	1	91	55	10	18.1818
asubramanian-gatk	INDEL	*	map_l100_m2_e1	het	89.6239	84.6778	95.1836	90.0945	1984	359	1996	101	13	12.8713
gduggal-snapvard	INDEL	I1_5	map_l125_m0_e0	*	89.9579	95.1613	85.2941	90.0943	295	15	493	85	27	31.7647
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	93.5484	95.0820	92.0635	90.0943	58	3	58	5	2	40.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	75.8621	61.1111	100.0000	90.0901	22	14	22	0	0
jpowers-varprowl	INDEL	D1_5	map_l150_m1_e0	het	93.7564	95.0207	92.5253	90.0901	458	24	458	37	19	51.3514
bgallagher-sentieon	INDEL	*	map_l100_m0_e0	hetalt	95.4305	93.9394	96.9697	90.0901	31	2	32	1	0	0.0000
ckim-vqsr	SNP	tv	segdup	homalt	98.5612	97.3132	99.8416	90.0895	3151	87	3151	5	5	100.0000
bgallagher-sentieon	INDEL	*	map_l150_m1_e0	*	97.9979	98.5800	97.4227	90.0883	1319	19	1323	35	7	20.0000
asubramanian-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het		0.0000	0.0000	90.0881	0	0	0	45	0	0.0000
asubramanian-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	90.0881	0	0	0	45	0	0.0000
gduggal-bwafb	INDEL	D16_PLUS	map_l125_m2_e0	*	84.0000	77.7778	91.3043	90.0862	21	6	21	2	2	100.0000
anovak-vg	INDEL	I1_5	map_l100_m2_e1	het	47.7657	37.9012	64.5714	90.0794	307	503	339	186	31	16.6667
bgallagher-sentieon	INDEL	D6_15	map_l100_m2_e1	het	95.6522	97.7778	93.6170	90.0774	132	3	132	9	2	22.2222
hfeng-pmm1	INDEL	I1_5	map_l150_m2_e1	het	97.1195	95.5836	98.7055	90.0771	303	14	305	4	0	0.0000
jlack-gatk	INDEL	*	map_l125_m1_e0	*	94.7690	98.2914	91.4903	90.0770	2071	36	2075	193	12	6.2176
asubramanian-gatk	INDEL	*	map_l100_m2_e0	het	89.6413	84.6987	95.1965	90.0770	1954	353	1962	99	13	13.1313
gduggal-bwafb	INDEL	D1_5	map_l150_m2_e1	homalt	98.5801	97.9839	99.1837	90.0770	243	5	243	2	2	100.0000
gduggal-snapvard	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	0.0000	0.0000	12.1622	90.0738	0	0	18	130	4	3.0769
ghariani-varprowl	INDEL	I1_5	map_l125_m2_e1	*	94.3117	95.2874	93.3559	90.0716	829	41	829	59	21	35.5932
jli-custom	INDEL	I6_15	segdup	hetalt	97.7273	95.5556	100.0000	90.0693	43	2	43	0	0
ckim-dragen	INDEL	*	map_l100_m0_e0	hetalt	93.5484	87.8788	100.0000	90.0662	29	4	30	0	0
raldana-dualsentieon	INDEL	I6_15	map_l125_m1_e0	homalt	86.6667	86.6667	86.6667	90.0662	13	2	13	2	0	0.0000
asubramanian-gatk	INDEL	I1_5	map_l100_m2_e1	het	87.1298	78.8889	97.2932	90.0657	639	171	647	18	2	11.1111
bgallagher-sentieon	INDEL	*	map_l125_m0_e0	*	97.5866	98.4127	96.7742	90.0652	868	14	870	29	6	20.6897
jpowers-varprowl	SNP	*	map_l250_m2_e1	homalt	98.1703	96.7255	99.6588	90.0637	2629	89	2629	9	5	55.5556
anovak-vg	INDEL	I1_5	map_l150_m0_e0	homalt	68.1120	89.5522	54.9550	90.0627	60	7	61	50	47	94.0000
gduggal-bwafb	SNP	tv	map_l250_m2_e1	het	96.7380	96.5903	96.8862	90.0589	1898	67	1898	61	11	18.0328
gduggal-snapplat	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	57.8898	44.1696	83.9744	90.0574	125	158	131	25	7	28.0000
gduggal-bwavard	INDEL	*	map_l100_m2_e0	het	90.0912	98.0928	83.2966	90.0573	2263	44	2269	455	186	40.8791
ciseli-custom	INDEL	D6_15	map_l100_m1_e0	het	63.4344	65.0794	61.8705	90.0572	82	44	86	53	13	24.5283

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