PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27851-27900 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e0 | * | 98.4000 | 97.6190 | 99.1935 | 90.1587 | 123 | 3 | 123 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 10.5263 | 90.1554 | 0 | 0 | 2 | 17 | 1 | 5.8824 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | homalt | 98.0671 | 97.9675 | 98.1670 | 90.1524 | 482 | 10 | 482 | 9 | 6 | 66.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 85.7143 | 80.0000 | 92.3077 | 90.1515 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 52.3810 | 68.7500 | 42.3077 | 90.1515 | 11 | 5 | 11 | 15 | 12 | 80.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 96.0000 | 100.0000 | 92.3077 | 90.1515 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 84.6154 | 90.1515 | 0 | 0 | 33 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | * | 78.5714 | 73.3333 | 84.6154 | 90.1515 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | * | 94.6429 | 100.0000 | 89.8305 | 90.1503 | 4 | 0 | 53 | 6 | 1 | 16.6667 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.1493 | 66 | 3 | 66 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.7867 | 95.1821 | 88.6251 | 90.1491 | 810 | 41 | 896 | 115 | 26 | 22.6087 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m1_e0 | het | 78.6517 | 89.7436 | 70.0000 | 90.1478 | 35 | 4 | 56 | 24 | 14 | 58.3333 | |
| ltrigg-rtg2 | INDEL | D6_15 | segdup | hetalt | 96.8421 | 93.8776 | 100.0000 | 90.1468 | 46 | 3 | 47 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 90.1457 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | segdup | homalt | 84.2758 | 74.4681 | 97.0588 | 90.1449 | 35 | 12 | 33 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.2036 | 96.4706 | 100.0000 | 90.1442 | 82 | 3 | 82 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m1_e0 | * | 61.6279 | 45.2991 | 96.3636 | 90.1434 | 53 | 64 | 53 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 90.1425 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | het | 96.3064 | 97.5104 | 95.1318 | 90.1420 | 470 | 12 | 469 | 24 | 2 | 8.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 77.4194 | 63.1579 | 100.0000 | 90.1408 | 12 | 7 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 14.2857 | 90.1408 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.1408 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | segdup | homalt | 99.3958 | 99.0735 | 99.7201 | 90.1395 | 3208 | 30 | 3207 | 9 | 7 | 77.7778 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | het | 85.2876 | 76.1276 | 96.9535 | 90.1394 | 9806 | 3075 | 9802 | 308 | 33 | 10.7143 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | * | 86.9569 | 95.6298 | 79.7263 | 90.1392 | 744 | 34 | 932 | 237 | 56 | 23.6287 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | * | 96.4779 | 96.0264 | 96.9336 | 90.1381 | 4809 | 199 | 4805 | 152 | 41 | 26.9737 | |
| hfeng-pmm2 | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.1376 | 43 | 2 | 43 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.5517 | 95.4545 | 97.6744 | 90.1376 | 42 | 2 | 42 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5422 | 96.3636 | 98.7500 | 90.1356 | 159 | 6 | 158 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | * | 79.8464 | 67.0968 | 98.5782 | 90.1356 | 208 | 102 | 208 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.8789 | 99.0654 | 69.7740 | 90.1347 | 1484 | 14 | 1482 | 642 | 38 | 5.9190 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.6292 | 95.5556 | 97.7273 | 90.1345 | 43 | 2 | 43 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 66.4234 | 53.8462 | 86.6667 | 90.1316 | 14 | 12 | 13 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.1316 | 15 | 0 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.1316 | 15 | 0 | 15 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | * | 78.3333 | 74.6032 | 82.4561 | 90.1299 | 94 | 32 | 94 | 20 | 19 | 95.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.9338 | 86.2903 | 63.1579 | 90.1262 | 107 | 17 | 84 | 49 | 4 | 8.1633 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | * | 98.6792 | 98.4934 | 98.8658 | 90.1251 | 523 | 8 | 523 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.5447 | 97.9339 | 99.1632 | 90.1240 | 237 | 5 | 237 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | * | 91.5832 | 95.0364 | 88.3721 | 90.1236 | 2087 | 109 | 2090 | 275 | 74 | 26.9091 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.1235 | 32 | 1 | 32 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 41.7303 | 90.1219 | 0 | 0 | 328 | 458 | 93 | 20.3057 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | homalt | 49.2722 | 32.6975 | 99.9253 | 90.1218 | 1337 | 2752 | 1337 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.4865 | 77.4194 | 97.9592 | 90.1210 | 96 | 28 | 96 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | homalt | 84.7865 | 75.3230 | 96.9697 | 90.1183 | 583 | 191 | 640 | 20 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.0000 | 52.1739 | 70.5882 | 90.1163 | 12 | 11 | 12 | 5 | 4 | 80.0000 | |
| ciseli-custom | SNP | tv | segdup | homalt | 97.7133 | 99.2897 | 96.1862 | 90.1152 | 3215 | 23 | 3203 | 127 | 72 | 56.6929 | |
| asubramanian-gatk | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.1149 | 43 | 2 | 43 | 0 | 0 | ||