PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27801-27850 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D16_PLUS | map_siren | homalt | 20.5128 | 11.7647 | 80.0000 | 90.1961 | 4 | 30 | 4 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 90.1961 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.5866 | 96.7742 | 98.4127 | 90.1946 | 120 | 4 | 124 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | segdup | het | 99.4118 | 99.7672 | 99.0589 | 90.1934 | 12002 | 28 | 12000 | 114 | 1 | 0.8772 | |
| hfeng-pmm3 | SNP | tv | segdup | homalt | 99.8920 | 99.9382 | 99.8457 | 90.1933 | 3236 | 2 | 3236 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | het | 81.1800 | 88.1323 | 75.2443 | 90.1933 | 453 | 61 | 462 | 152 | 57 | 37.5000 | |
| ckim-isaac | SNP | tv | map_l250_m0_e0 | homalt | 57.0370 | 39.8964 | 100.0000 | 90.1911 | 77 | 116 | 77 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | * | 96.1788 | 95.9417 | 96.4172 | 90.1898 | 7565 | 320 | 7562 | 281 | 65 | 23.1317 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | * | 84.1360 | 92.1769 | 77.3854 | 90.1890 | 813 | 69 | 1249 | 365 | 97 | 26.5753 | |
| bgallagher-sentieon | SNP | * | segdup | * | 99.5028 | 99.8432 | 99.1647 | 90.1877 | 28023 | 44 | 28017 | 236 | 12 | 5.0848 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.9412 | 91.5789 | 96.4286 | 90.1869 | 87 | 8 | 81 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 96.0274 | 98.7132 | 93.4839 | 90.1867 | 1074 | 14 | 1076 | 75 | 6 | 8.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | * | 65.7143 | 69.6970 | 62.1622 | 90.1857 | 23 | 10 | 23 | 14 | 7 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 90.1855 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.5593 | 97.6793 | 93.5294 | 90.1841 | 1389 | 33 | 1431 | 99 | 25 | 25.2525 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 90.1840 | 1 | 0 | 15 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.1840 | 32 | 1 | 32 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_siren | * | 94.5527 | 90.6977 | 98.7500 | 90.1840 | 78 | 8 | 79 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | homalt | 99.4431 | 99.3641 | 99.5223 | 90.1798 | 625 | 4 | 625 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.1786 | 44 | 5 | 44 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | segdup | homalt | 98.3768 | 97.4676 | 99.3031 | 90.1749 | 3156 | 82 | 3135 | 22 | 21 | 95.4545 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 37.8203 | 79.7927 | 24.7836 | 90.1732 | 308 | 78 | 315 | 956 | 27 | 2.8243 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.8589 | 78.9855 | 96.4758 | 90.1732 | 218 | 58 | 219 | 8 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | het | 95.5224 | 97.7099 | 93.4307 | 90.1722 | 128 | 3 | 128 | 9 | 2 | 22.2222 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.1720 | 40 | 4 | 40 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.3847 | 84.0798 | 97.7117 | 90.1711 | 24141 | 4571 | 24169 | 566 | 135 | 23.8516 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 90.3847 | 84.0798 | 97.7117 | 90.1711 | 24141 | 4571 | 24169 | 566 | 135 | 23.8516 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | * | 82.3529 | 75.0000 | 91.3043 | 90.1709 | 21 | 7 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.1709 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.4545 | 100.0000 | 91.3043 | 90.1709 | 20 | 0 | 21 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | map_l125_m0_e0 | homalt | 80.6569 | 69.7183 | 95.6667 | 90.1704 | 198 | 86 | 287 | 13 | 4 | 30.7692 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | * | 98.1257 | 98.0916 | 98.1597 | 90.1683 | 2827 | 55 | 2827 | 53 | 12 | 22.6415 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | het | 81.1378 | 88.3142 | 75.0400 | 90.1683 | 461 | 61 | 469 | 156 | 58 | 37.1795 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 58.1498 | 70.5882 | 49.4382 | 90.1657 | 72 | 30 | 88 | 90 | 30 | 33.3333 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 96.2945 | 98.3664 | 94.3080 | 90.1657 | 843 | 14 | 845 | 51 | 5 | 9.8039 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 91.8425 | 88.6264 | 95.3008 | 90.1645 | 1013 | 130 | 1014 | 50 | 5 | 10.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | het | 97.6577 | 97.3244 | 97.9933 | 90.1645 | 291 | 8 | 293 | 6 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | homalt | 98.1250 | 97.9210 | 98.3299 | 90.1643 | 471 | 10 | 471 | 8 | 6 | 75.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | het | 85.3846 | 76.2889 | 96.9428 | 90.1640 | 9929 | 3086 | 9925 | 313 | 33 | 10.5431 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.1639 | 12 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 90.1639 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 90.1639 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.2821 | 66.6667 | 41.6667 | 90.1639 | 10 | 5 | 10 | 14 | 11 | 78.5714 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.0497 | 90.1554 | 60.0000 | 90.1623 | 348 | 38 | 291 | 194 | 26 | 13.4021 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | * | 98.8785 | 99.4323 | 98.3308 | 90.1611 | 7181 | 41 | 7010 | 119 | 12 | 10.0840 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 90.1610 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m1_e0 | * | 98.9581 | 99.3885 | 98.5313 | 90.1600 | 4551 | 28 | 4495 | 67 | 6 | 8.9552 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e0 | * | 98.7654 | 97.5610 | 100.0000 | 90.1599 | 80 | 2 | 80 | 0 | 0 | ||