PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27201-27250 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 90.6667 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 42.8571 | 90.6667 | 0 | 0 | 3 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.9085 | 86.3636 | 98.2143 | 90.6667 | 57 | 9 | 55 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9078 | 97.1503 | 98.6772 | 90.6644 | 375 | 11 | 373 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1429 | 95.7746 | 98.5507 | 90.6631 | 68 | 3 | 68 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 90.6627 | 29 | 13 | 29 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2222 | 94.5946 | 100.0000 | 90.6615 | 35 | 2 | 24 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 98.0028 | 98.4674 | 97.5425 | 90.6603 | 514 | 8 | 516 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 90.6598 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | * | 85.1927 | 82.3529 | 88.2353 | 90.6593 | 14 | 3 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | * | 98.7380 | 99.5489 | 97.9403 | 90.6578 | 2869 | 13 | 2853 | 60 | 6 | 10.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 90.6574 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | segdup | * | 99.7247 | 99.7890 | 99.6604 | 90.6553 | 8514 | 18 | 8510 | 29 | 5 | 17.2414 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 34.2857 | 24.0000 | 60.0000 | 90.6542 | 6 | 19 | 6 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e0 | * | 95.1456 | 92.4528 | 98.0000 | 90.6542 | 49 | 4 | 49 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | segdup | het | 99.6406 | 99.6785 | 99.6028 | 90.6534 | 5270 | 17 | 5266 | 21 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 95.2978 | 92.6829 | 98.0645 | 90.6514 | 152 | 12 | 152 | 3 | 2 | 66.6667 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.8937 | 73.5294 | 92.4051 | 90.6509 | 75 | 27 | 73 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 90.1158 | 85.1852 | 95.6522 | 90.6504 | 23 | 4 | 22 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | * | 96.7114 | 96.8650 | 96.5583 | 90.6490 | 1514 | 49 | 1515 | 54 | 7 | 12.9630 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | het | 96.1235 | 98.1795 | 94.1518 | 90.6489 | 2265 | 42 | 2270 | 141 | 14 | 9.9291 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | * | 95.0980 | 94.1748 | 96.0396 | 90.6481 | 97 | 6 | 97 | 4 | 0 | 0.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 77.5000 | 75.6098 | 79.4872 | 90.6475 | 31 | 10 | 31 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | het | 94.3995 | 98.1481 | 90.9266 | 90.6464 | 477 | 9 | 471 | 47 | 19 | 40.4255 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | homalt | 36.1328 | 22.0501 | 100.0000 | 90.6459 | 1480 | 5232 | 1480 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 78.8732 | 66.6667 | 96.5517 | 90.6452 | 28 | 14 | 28 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 94.7826 | 93.9655 | 95.6140 | 90.6404 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.3621 | 99.0244 | 95.7547 | 90.6402 | 203 | 2 | 203 | 9 | 7 | 77.7778 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3621 | 99.0244 | 95.7547 | 90.6402 | 203 | 2 | 203 | 9 | 7 | 77.7778 | |
| astatham-gatk | SNP | tv | map_l250_m2_e0 | * | 92.3931 | 86.6065 | 99.0083 | 90.6397 | 2496 | 386 | 2496 | 25 | 7 | 28.0000 | |
| ciseli-custom | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 4.5455 | 90.6383 | 0 | 0 | 1 | 21 | 12 | 57.1429 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 90.6383 | 22 | 4 | 22 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | het | 98.1864 | 98.4983 | 97.8764 | 90.6378 | 5116 | 78 | 5116 | 111 | 10 | 9.0090 | |
| anovak-vg | INDEL | * | map_l125_m0_e0 | * | 71.3287 | 72.2222 | 70.4570 | 90.6359 | 637 | 245 | 663 | 278 | 156 | 56.1151 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 95.0223 | 94.9527 | 95.0920 | 90.6349 | 301 | 16 | 310 | 16 | 2 | 12.5000 | |
| jpowers-varprowl | INDEL | I1_5 | segdup | homalt | 95.4644 | 93.4461 | 97.5717 | 90.6347 | 442 | 31 | 442 | 11 | 11 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 94.2515 | 97.0297 | 91.6279 | 90.6318 | 196 | 6 | 197 | 18 | 2 | 11.1111 | |
| hfeng-pmm2 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.6318 | 43 | 6 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | segdup | homalt | 98.9899 | 98.0000 | 100.0000 | 90.6310 | 49 | 1 | 49 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | segdup | * | 91.9403 | 88.0000 | 96.2500 | 90.6268 | 154 | 21 | 154 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.6250 | 6 | 3 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.6250 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6250 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.6250 | 2 | 1 | 3 | 0 | 0 | ||