PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27151-27200 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 90.6977 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 4 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 37.5000 | 90.6977 | 0 | 0 | 6 | 10 | 8 | 80.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 8 | 0 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.1176 | 88.8889 | 100.0000 | 90.6977 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | het | 82.7586 | 70.5882 | 100.0000 | 90.6977 | 12 | 5 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 80.0000 | 76.9231 | 83.3333 | 90.6977 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.1053 | 85.3659 | 100.0000 | 90.6977 | 35 | 6 | 32 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | het | 98.1822 | 98.4992 | 97.8671 | 90.6974 | 5185 | 79 | 5185 | 113 | 10 | 8.8496 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | het | 80.1370 | 67.8261 | 97.9079 | 90.6968 | 234 | 111 | 234 | 5 | 1 | 20.0000 | |
| ckim-isaac | SNP | tv | map_l250_m1_e0 | * | 60.0000 | 42.9543 | 99.4751 | 90.6960 | 1137 | 1510 | 1137 | 6 | 1 | 16.6667 | |
| anovak-vg | INDEL | C1_5 | * | het | 40.9055 | 77.7778 | 27.7500 | 90.6933 | 7 | 2 | 111 | 289 | 20 | 6.9204 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.6883 | 23 | 1 | 23 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.6883 | 23 | 1 | 23 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.7644 | 99.0244 | 89.0351 | 90.6863 | 203 | 2 | 203 | 25 | 23 | 92.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.7644 | 99.0244 | 89.0351 | 90.6863 | 203 | 2 | 203 | 25 | 23 | 92.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | het | 96.1817 | 98.2074 | 94.2378 | 90.6863 | 2301 | 42 | 2306 | 141 | 14 | 9.9291 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.5589 | 88.9822 | 78.7587 | 90.6848 | 1801 | 223 | 1802 | 486 | 14 | 2.8807 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.5974 | 93.6842 | 97.5904 | 90.6846 | 89 | 6 | 81 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 97.6916 | 98.5998 | 96.8000 | 90.6836 | 845 | 12 | 847 | 28 | 3 | 10.7143 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 57.3256 | 86.6375 | 42.8337 | 90.6835 | 791 | 122 | 783 | 1045 | 45 | 4.3062 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 51.7241 | 34.8837 | 100.0000 | 90.6832 | 15 | 28 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 84.1121 | 72.5806 | 100.0000 | 90.6832 | 45 | 17 | 45 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.5393 | 80.5556 | 71.1111 | 90.6832 | 29 | 7 | 32 | 13 | 6 | 46.1538 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.3649 | 84.9741 | 98.7952 | 90.6820 | 328 | 58 | 328 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | het | 25.8366 | 16.7832 | 56.0976 | 90.6818 | 24 | 119 | 23 | 18 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 96.1316 | 98.7752 | 93.6258 | 90.6812 | 1129 | 14 | 1131 | 77 | 6 | 7.7922 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | het | 98.2172 | 98.0583 | 98.3766 | 90.6808 | 303 | 6 | 303 | 5 | 1 | 20.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.6110 | 90.9420 | 96.4413 | 90.6799 | 251 | 25 | 271 | 10 | 1 | 10.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 65.4545 | 54.5455 | 81.8182 | 90.6780 | 18 | 15 | 18 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 79.4806 | 67.1084 | 97.4457 | 90.6775 | 557 | 273 | 763 | 20 | 11 | 55.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6528 | 92.9412 | 96.4286 | 90.6770 | 79 | 6 | 81 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 90.6760 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | homalt | 97.8593 | 97.5610 | 98.1595 | 90.6751 | 160 | 4 | 160 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.8491 | 96.9466 | 94.7761 | 90.6750 | 127 | 4 | 127 | 7 | 2 | 28.5714 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e1 | het | 98.0666 | 98.7652 | 97.3778 | 90.6744 | 5199 | 65 | 5199 | 140 | 25 | 17.8571 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | het | 97.5150 | 98.3626 | 96.6819 | 90.6743 | 841 | 14 | 845 | 29 | 4 | 13.7931 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | het | 97.2766 | 97.0297 | 97.5248 | 90.6741 | 196 | 6 | 197 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.5157 | 95.8478 | 97.1930 | 90.6741 | 277 | 12 | 277 | 8 | 3 | 37.5000 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m1_e0 | * | 96.7371 | 96.6912 | 96.7831 | 90.6738 | 1052 | 36 | 1053 | 35 | 5 | 14.2857 | |
| eyeh-varpipe | SNP | ti | segdup | het | 97.9291 | 99.8421 | 96.0882 | 90.6738 | 12011 | 19 | 11815 | 481 | 3 | 0.6237 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 90.6736 | 18 | 1 | 18 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 10.0854 | 5.6911 | 44.2623 | 90.6728 | 28 | 464 | 27 | 34 | 28 | 82.3529 | |
| anovak-vg | INDEL | I1_5 | map_l150_m2_e0 | * | 60.2392 | 62.8131 | 57.8680 | 90.6723 | 326 | 193 | 342 | 249 | 156 | 62.6506 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | * | 95.1063 | 93.9024 | 96.3415 | 90.6712 | 77 | 5 | 79 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | homalt | 98.1651 | 98.1707 | 98.1595 | 90.6697 | 161 | 3 | 160 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||