PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26651-26700 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 91.0526 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | het | 79.8048 | 67.2199 | 98.1873 | 91.0516 | 324 | 158 | 325 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | het | 84.1017 | 75.1633 | 95.4530 | 91.0507 | 5523 | 1825 | 5521 | 263 | 7 | 2.6616 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 91.0506 | 30 | 5 | 23 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | segdup | homalt | 99.0657 | 99.8456 | 98.2979 | 91.0501 | 3233 | 5 | 3234 | 56 | 29 | 51.7857 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.3822 | 96.3731 | 98.4127 | 91.0490 | 372 | 14 | 372 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.0476 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | * | segdup | * | 96.6280 | 98.6033 | 94.7303 | 91.0474 | 27675 | 392 | 27504 | 1530 | 201 | 13.1373 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | hetalt | 83.1683 | 75.0000 | 93.3333 | 91.0448 | 30 | 10 | 28 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.0448 | 24 | 0 | 24 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 91.0448 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 91.0448 | 10 | 2 | 10 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.0448 | 12 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 91.0448 | 3 | 9 | 3 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 91.0448 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m1_e0 | homalt | 70.5882 | 54.5455 | 100.0000 | 91.0448 | 18 | 15 | 18 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m2_e1 | het | 97.3802 | 98.2684 | 96.5079 | 91.0427 | 908 | 16 | 912 | 33 | 3 | 9.0909 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 92.0739 | 98.1855 | 86.6785 | 91.0422 | 487 | 9 | 488 | 75 | 3 | 4.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | homalt | 81.9113 | 82.7586 | 81.0811 | 91.0412 | 24 | 5 | 30 | 7 | 7 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.2678 | 96.7391 | 97.8022 | 91.0404 | 267 | 9 | 267 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 91.0394 | 25 | 18 | 25 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 91.0394 | 25 | 18 | 25 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.0394 | 32 | 3 | 25 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 91.0377 | 128 | 3 | 128 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | het | 93.5679 | 92.3077 | 94.8630 | 91.0374 | 276 | 23 | 277 | 15 | 2 | 13.3333 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 79.7441 | 67.5862 | 97.2356 | 91.0364 | 588 | 282 | 809 | 23 | 11 | 47.8261 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | homalt | 43.7956 | 41.6667 | 46.1538 | 91.0345 | 5 | 7 | 6 | 7 | 7 | 100.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5610 | 96.9697 | 98.1595 | 91.0341 | 160 | 5 | 160 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.8108 | 77.6224 | 91.0714 | 91.0328 | 111 | 32 | 102 | 10 | 3 | 30.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.0326 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 37.0370 | 24.5902 | 75.0000 | 91.0314 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4615 | 92.0000 | 85.1852 | 91.0299 | 23 | 2 | 23 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | * | 61.4458 | 60.0000 | 62.9630 | 91.0299 | 15 | 10 | 17 | 10 | 2 | 20.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5163 | 96.6321 | 98.4169 | 91.0275 | 373 | 13 | 373 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e0 | * | 69.3373 | 53.2274 | 99.4313 | 91.0275 | 16954 | 14898 | 16958 | 97 | 30 | 30.9278 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.7690 | 82.4242 | 98.5507 | 91.0273 | 136 | 29 | 136 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.0256 | 7 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.0256 | 8 | 0 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e1 | het | 93.1034 | 90.0000 | 96.4286 | 91.0256 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 79.5482 | 67.3279 | 97.1883 | 91.0248 | 577 | 280 | 795 | 23 | 11 | 47.8261 | |
| hfeng-pmm1 | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 91.0242 | 78 | 6 | 78 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | * | 69.5020 | 53.4244 | 99.4224 | 91.0196 | 17208 | 15002 | 17212 | 100 | 30 | 30.0000 | |
| ckim-isaac | SNP | * | map_l250_m2_e1 | * | 64.5467 | 47.7776 | 99.4527 | 91.0189 | 3816 | 4171 | 3816 | 21 | 4 | 19.0476 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m1_e0 | * | 83.2000 | 80.0000 | 86.6667 | 91.0180 | 12 | 3 | 13 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | homalt | 59.9144 | 44.1176 | 93.3333 | 91.0180 | 15 | 19 | 14 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e1 | het | 97.8261 | 95.7447 | 100.0000 | 91.0180 | 45 | 2 | 45 | 0 | 0 | ||