PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26351-26400 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 89.6000 | 91.8033 | 87.5000 | 91.2688 | 56 | 5 | 56 | 8 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | het | 98.5825 | 99.2725 | 97.9021 | 91.2682 | 3275 | 24 | 3220 | 69 | 4 | 5.7971 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.2664 | 0 | 0 | 0 | 20 | 0 | 0.0000 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8974 | 99.0244 | 94.8598 | 91.2653 | 203 | 2 | 203 | 11 | 10 | 90.9091 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8974 | 99.0244 | 94.8598 | 91.2653 | 203 | 2 | 203 | 11 | 10 | 90.9091 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.0563 | 64.2857 | 93.1034 | 91.2651 | 27 | 15 | 27 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | * | map_l125_m0_e0 | het | 78.6100 | 67.5932 | 93.9173 | 91.2651 | 8560 | 4104 | 8492 | 550 | 460 | 83.6364 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7013 | 97.4359 | 100.0000 | 91.2644 | 38 | 1 | 38 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | het | 93.5860 | 98.4663 | 89.1667 | 91.2643 | 321 | 5 | 321 | 39 | 10 | 25.6410 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | * | 56.4417 | 39.6552 | 97.8723 | 91.2639 | 46 | 70 | 46 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e0 | * | 86.6114 | 78.3027 | 96.8927 | 91.2636 | 895 | 248 | 1029 | 33 | 27 | 81.8182 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | hetalt | 85.8447 | 75.2000 | 100.0000 | 91.2621 | 94 | 31 | 27 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | het | 77.7778 | 77.7778 | 77.7778 | 91.2621 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 33.3333 | 91.2621 | 0 | 0 | 3 | 6 | 4 | 66.6667 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 91.2621 | 0 | 1 | 0 | 18 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 91.2621 | 0 | 0 | 0 | 9 | 0 | 0.0000 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.8252 | 96.8237 | 91.0068 | 91.2594 | 884 | 29 | 931 | 92 | 19 | 20.6522 | |
| gduggal-snapvard | SNP | ti | map_l250_m1_e0 | * | 86.1545 | 95.0207 | 78.8017 | 91.2590 | 4351 | 228 | 4327 | 1164 | 68 | 5.8419 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2587 | 32 | 3 | 25 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | het | 97.7378 | 97.9897 | 97.4872 | 91.2583 | 1901 | 39 | 1901 | 49 | 9 | 18.3673 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | * | 66.9029 | 50.5622 | 98.8488 | 91.2579 | 10478 | 10245 | 10476 | 122 | 3 | 2.4590 | |
| cchapple-custom | SNP | ti | map_l250_m1_e0 | het | 95.4232 | 95.5189 | 95.3277 | 91.2575 | 2835 | 133 | 2836 | 139 | 37 | 26.6187 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1831 | 97.1831 | 97.1831 | 91.2562 | 69 | 2 | 69 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | het | 90.3770 | 98.4270 | 83.5443 | 91.2553 | 1314 | 21 | 1320 | 260 | 67 | 25.7692 | |
| cchapple-custom | SNP | ti | segdup | * | 99.6040 | 99.8311 | 99.3779 | 91.2552 | 19504 | 33 | 19490 | 122 | 16 | 13.1148 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | het | 96.7919 | 97.9592 | 95.6522 | 91.2548 | 48 | 1 | 66 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.8078 | 84.4560 | 98.1928 | 91.2540 | 326 | 60 | 326 | 6 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | map_l250_m0_e0 | homalt | 99.1221 | 98.7281 | 99.5192 | 91.2532 | 621 | 8 | 621 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | homalt | 98.1818 | 97.9275 | 98.4375 | 91.2528 | 189 | 4 | 189 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.2500 | 14 | 28 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.9316 | 85.1852 | 95.2381 | 91.2500 | 23 | 4 | 20 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.2500 | 8 | 0 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.2500 | 7 | 1 | 7 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l250_m1_e0 | * | 74.3435 | 81.2102 | 68.5475 | 91.2491 | 5865 | 1357 | 5819 | 2670 | 600 | 22.4719 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.7071 | 96.5398 | 96.8750 | 91.2489 | 279 | 10 | 279 | 9 | 3 | 33.3333 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | * | 96.7298 | 97.2318 | 96.2329 | 91.2470 | 281 | 8 | 281 | 11 | 1 | 9.0909 | |
| qzeng-custom | SNP | tv | map_l125_m0_e0 | het | 81.8738 | 72.6880 | 93.7170 | 91.2462 | 3199 | 1202 | 3192 | 214 | 178 | 83.1776 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 95.1613 | 98.3333 | 92.1875 | 91.2449 | 59 | 1 | 59 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 91.2442 | 38 | 4 | 38 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.2409 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9405 | 96.8326 | 99.0741 | 91.2409 | 214 | 7 | 214 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | het | 49.2776 | 39.9177 | 64.3713 | 91.2405 | 194 | 292 | 215 | 119 | 14 | 11.7647 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | hetalt | 82.6305 | 73.8095 | 93.8462 | 91.2399 | 62 | 22 | 61 | 4 | 2 | 50.0000 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | * | 66.8194 | 50.4631 | 98.8632 | 91.2397 | 10351 | 10161 | 10349 | 119 | 3 | 2.5210 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 91.2381 | 45 | 3 | 46 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l150_m1_e0 | het | 70.8356 | 70.4094 | 71.2670 | 91.2380 | 602 | 253 | 630 | 254 | 71 | 27.9528 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 87.4852 | 80.3681 | 95.9854 | 91.2376 | 262 | 64 | 263 | 11 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 70.5882 | 91.2371 | 0 | 0 | 12 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 89.7059 | 96.8254 | 83.5616 | 91.2365 | 122 | 4 | 122 | 24 | 3 | 12.5000 | |
| astatham-gatk | INDEL | * | map_l150_m1_e0 | het | 95.3423 | 94.3860 | 96.3183 | 91.2356 | 807 | 48 | 811 | 31 | 4 | 12.9032 | |