PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26301-26350 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.3043 | 14 | 28 | 14 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 91.3043 | 0 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.3043 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 91.3043 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 91.3043 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | homalt | 59.0164 | 49.5413 | 72.9730 | 91.3043 | 54 | 55 | 54 | 20 | 19 | 95.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 75.0000 | 91.3043 | 0 | 0 | 3 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 12.5000 | 8.3333 | 25.0000 | 91.3043 | 2 | 22 | 2 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 88.8889 | 91.3043 | 0 | 0 | 16 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 91.3043 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | homalt | 69.2308 | 52.9412 | 100.0000 | 91.3043 | 18 | 16 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 57.1429 | 40.0000 | 100.0000 | 91.3043 | 6 | 9 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9121 | 99.5122 | 94.4444 | 91.3008 | 204 | 1 | 204 | 12 | 10 | 83.3333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.9121 | 99.5122 | 94.4444 | 91.3008 | 204 | 1 | 204 | 12 | 10 | 83.3333 | |
| anovak-vg | SNP | ti | map_l250_m1_e0 | * | 74.8997 | 81.6117 | 69.2079 | 91.2986 | 3737 | 842 | 3722 | 1656 | 368 | 22.2222 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | * | 96.2305 | 97.3642 | 95.1229 | 91.2925 | 4876 | 132 | 4876 | 250 | 52 | 20.8000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 33.7553 | 24.2424 | 55.5556 | 91.2903 | 16 | 50 | 15 | 12 | 2 | 16.6667 | |
| gduggal-snapvard | INDEL | * | segdup | homalt | 87.9737 | 80.1042 | 97.5580 | 91.2900 | 769 | 191 | 799 | 20 | 20 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | * | 97.4708 | 97.4708 | 97.4708 | 91.2896 | 501 | 13 | 501 | 13 | 4 | 30.7692 | |
| ltrigg-rtg2 | INDEL | * | map_siren | hetalt | 94.4986 | 90.2834 | 99.1266 | 91.2895 | 223 | 24 | 227 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2892 | 32 | 3 | 25 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | map_l250_m1_e0 | * | 94.8303 | 94.6137 | 95.0480 | 91.2876 | 6833 | 389 | 6833 | 356 | 90 | 25.2809 | |
| gduggal-bwafb | SNP | ti | segdup | * | 99.0195 | 99.5086 | 98.5352 | 91.2837 | 19441 | 96 | 19441 | 289 | 16 | 5.5363 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.6407 | 97.4638 | 97.8182 | 91.2809 | 269 | 7 | 269 | 6 | 4 | 66.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.0005 | 94.7368 | 99.3750 | 91.2807 | 144 | 8 | 159 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | hetalt | 95.7055 | 92.8571 | 98.7342 | 91.2804 | 78 | 6 | 78 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | segdup | * | 97.8692 | 96.8586 | 98.9011 | 91.2793 | 185 | 6 | 180 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 82.8025 | 91.5493 | 75.5814 | 91.2779 | 65 | 6 | 65 | 21 | 20 | 95.2381 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.8653 | 67.0588 | 98.7179 | 91.2752 | 57 | 28 | 77 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | het | 74.1845 | 59.2724 | 99.1222 | 91.2737 | 7332 | 5038 | 7340 | 65 | 21 | 32.3077 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.1176 | 88.6792 | 95.8333 | 91.2727 | 47 | 6 | 46 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7044 | 96.5909 | 98.8439 | 91.2714 | 170 | 6 | 171 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 91.2703 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 91.2698 | 25 | 10 | 22 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | * | 70.8333 | 65.3846 | 77.2727 | 91.2698 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 91.2698 | 11 | 1 | 11 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m0_e0 | homalt | 98.8067 | 98.7281 | 98.8854 | 91.2693 | 621 | 8 | 621 | 7 | 5 | 71.4286 | |