PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26251-26300 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m0_e0 | * | 74.8768 | 73.7864 | 76.0000 | 91.3420 | 76 | 27 | 76 | 24 | 21 | 87.5000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.5681 | 83.3333 | 72.5490 | 91.3413 | 35 | 7 | 37 | 14 | 7 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.3402 | 42 | 6 | 42 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | segdup | * | 99.4858 | 99.8125 | 99.1612 | 91.3387 | 8516 | 16 | 8512 | 72 | 6 | 8.3333 | |
| jlack-gatk | INDEL | * | map_l125_m1_e0 | het | 92.6306 | 98.1273 | 87.7170 | 91.3380 | 1310 | 25 | 1314 | 184 | 8 | 4.3478 | |
| ckim-dragen | SNP | tv | map_l250_m2_e0 | het | 96.2715 | 96.4948 | 96.0493 | 91.3378 | 1872 | 68 | 1872 | 77 | 5 | 6.4935 | |
| qzeng-custom | INDEL | I1_5 | segdup | homalt | 99.1688 | 99.7886 | 98.5567 | 91.3377 | 472 | 1 | 478 | 7 | 6 | 85.7143 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | het | 97.8993 | 97.7346 | 98.0645 | 91.3359 | 302 | 7 | 304 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | het | 97.2014 | 97.4446 | 96.9595 | 91.3349 | 572 | 15 | 574 | 18 | 2 | 11.1111 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | * | 84.9127 | 95.5933 | 76.3788 | 91.3348 | 2755 | 127 | 2742 | 848 | 31 | 3.6557 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | * | 90.8639 | 95.8060 | 86.4066 | 91.3346 | 731 | 32 | 731 | 115 | 21 | 18.2609 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 98.0132 | 97.3684 | 98.6667 | 91.3345 | 148 | 4 | 148 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | homalt | 91.1852 | 92.0000 | 90.3846 | 91.3333 | 46 | 4 | 47 | 5 | 5 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l250_m2_e1 | * | 60.3106 | 43.2785 | 99.4484 | 91.3314 | 1262 | 1654 | 1262 | 7 | 1 | 14.2857 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | * | 97.9875 | 97.9847 | 97.9903 | 91.3313 | 1410 | 29 | 1414 | 29 | 7 | 24.1379 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.7527 | 83.5526 | 96.9466 | 91.3302 | 127 | 25 | 127 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.0851 | 94.1176 | 53.3333 | 91.3295 | 16 | 1 | 16 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.3295 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 91.3284 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 84.0880 | 84.1270 | 84.0491 | 91.3252 | 106 | 20 | 137 | 26 | 6 | 23.0769 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | * | 65.2174 | 55.5556 | 78.9474 | 91.3242 | 15 | 12 | 15 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | tv | segdup | het | 99.6497 | 99.5839 | 99.7157 | 91.3241 | 5265 | 22 | 5261 | 15 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | map_l150_m2_e0 | * | 96.3093 | 96.4489 | 96.1702 | 91.3225 | 1358 | 50 | 1356 | 54 | 9 | 16.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m1_e0 | * | 91.3043 | 84.0000 | 100.0000 | 91.3223 | 21 | 4 | 21 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.9316 | 85.1852 | 95.2381 | 91.3223 | 23 | 4 | 20 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.6744 | 96.7105 | 98.6577 | 91.3221 | 147 | 5 | 147 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e0 | * | 98.0504 | 98.0824 | 98.0184 | 91.3212 | 1381 | 27 | 1385 | 28 | 6 | 21.4286 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | * | 96.1137 | 96.3169 | 95.9113 | 91.3208 | 1386 | 53 | 1384 | 59 | 11 | 18.6441 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | * | 96.6334 | 98.5428 | 94.7967 | 91.3207 | 2164 | 32 | 2168 | 119 | 11 | 9.2437 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 86.7845 | 78.5653 | 96.9245 | 91.3188 | 909 | 248 | 1040 | 33 | 27 | 81.8182 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | * | 90.5545 | 95.5013 | 86.0950 | 91.3170 | 743 | 35 | 743 | 120 | 22 | 18.3333 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 91.3158 | 66 | 3 | 66 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | het | 96.6071 | 94.5804 | 98.7226 | 91.3140 | 541 | 31 | 541 | 7 | 3 | 42.8571 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e0 | * | 97.1888 | 96.0317 | 98.3740 | 91.3136 | 121 | 5 | 121 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | * | 46.3852 | 30.2138 | 99.8032 | 91.3119 | 13695 | 31632 | 13692 | 27 | 6 | 22.2222 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m0_e0 | homalt | 99.4273 | 99.5413 | 99.3135 | 91.3104 | 434 | 2 | 434 | 3 | 3 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | * | 60.1307 | 43.0951 | 99.4396 | 91.3095 | 1242 | 1640 | 1242 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | * | 95.3756 | 95.3488 | 95.4023 | 91.3087 | 82 | 4 | 83 | 4 | 1 | 25.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | het | 97.7665 | 98.0153 | 97.5190 | 91.3080 | 1926 | 39 | 1926 | 49 | 9 | 18.3673 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 91.3043 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.3043 | 6 | 2 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 91.3043 | 2 | 3 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 91.3043 | 14 | 1 | 14 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 28.5714 | 100.0000 | 16.6667 | 91.3043 | 1 | 0 | 1 | 5 | 4 | 80.0000 | |