PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26201-26250 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 94.8440 | 94.3182 | 95.3757 | 91.3802 | 166 | 10 | 165 | 8 | 2 | 25.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 91.3793 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | het | 27.5862 | 21.0526 | 40.0000 | 91.3793 | 4 | 15 | 4 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.3793 | 0 | 0 | 0 | 5 | 5 | 100.0000 | ||
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.3848 | 95.6522 | 89.3333 | 91.3793 | 66 | 3 | 67 | 8 | 4 | 50.0000 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | homalt | 74.0771 | 78.6585 | 70.0000 | 91.3793 | 129 | 35 | 133 | 57 | 53 | 92.9825 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | * | 90.3416 | 95.3662 | 85.8199 | 91.3779 | 1276 | 62 | 1277 | 211 | 47 | 22.2749 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | het | 78.3377 | 64.9794 | 98.6095 | 91.3777 | 8370 | 4511 | 8368 | 118 | 2 | 1.6949 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e1 | het | 97.9522 | 97.7918 | 98.1132 | 91.3774 | 310 | 7 | 312 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | segdup | homalt | 94.9495 | 100.0000 | 90.3846 | 91.3765 | 50 | 0 | 47 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.3761 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4608 | 99.3080 | 95.6811 | 91.3754 | 287 | 2 | 288 | 13 | 1 | 7.6923 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | het | 94.1176 | 94.1176 | 94.1176 | 91.3706 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l150_m2_e1 | * | 74.8271 | 60.3197 | 98.5227 | 91.3700 | 868 | 571 | 867 | 13 | 5 | 38.4615 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.3690 | 28 | 5 | 29 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.3690 | 28 | 5 | 29 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 91.3669 | 0 | 0 | 3 | 9 | 2 | 22.2222 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 91.3669 | 24 | 18 | 24 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.3669 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.3669 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 91.3669 | 24 | 18 | 24 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 91.6667 | 91.3669 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e1 | het | 85.7143 | 75.0000 | 100.0000 | 91.3669 | 12 | 4 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l150_m2_e0 | * | 74.8018 | 60.2983 | 98.4919 | 91.3653 | 849 | 559 | 849 | 13 | 5 | 38.4615 | |
| jlack-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 92.1122 | 87.8788 | 96.7742 | 91.3649 | 29 | 4 | 30 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | het | 97.0280 | 97.0280 | 97.0280 | 91.3647 | 555 | 17 | 555 | 17 | 12 | 70.5882 | |
| ckim-isaac | INDEL | D1_5 | segdup | homalt | 98.4485 | 97.2145 | 99.7143 | 91.3644 | 349 | 10 | 349 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l125_m0_e0 | het | 76.7738 | 64.8796 | 94.0081 | 91.3630 | 5361 | 2902 | 5350 | 341 | 285 | 83.5777 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | het | 96.3935 | 97.2956 | 95.5080 | 91.3622 | 3166 | 88 | 3168 | 149 | 10 | 6.7114 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 94.9817 | 95.7447 | 94.2308 | 91.3621 | 45 | 2 | 49 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | homalt | 47.8809 | 31.4759 | 100.0000 | 91.3619 | 418 | 910 | 418 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 74.3814 | 59.9765 | 97.8927 | 91.3619 | 511 | 341 | 511 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | D16_PLUS | segdup | het | 82.8571 | 78.3784 | 87.8788 | 91.3613 | 29 | 8 | 29 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 98.6755 | 98.0263 | 99.3333 | 91.3594 | 149 | 3 | 149 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | het | 95.1716 | 95.6725 | 94.6759 | 91.3591 | 818 | 37 | 818 | 46 | 5 | 10.8696 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 91.3580 | 4 | 1 | 4 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 85.7143 | 85.7143 | 85.7143 | 91.3580 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_siren | * | 85.4653 | 85.3147 | 85.6164 | 91.3558 | 122 | 21 | 125 | 21 | 10 | 47.6190 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.5756 | 96.9298 | 98.2301 | 91.3542 | 221 | 7 | 222 | 4 | 3 | 75.0000 | |
| ckim-dragen | SNP | * | map_l250_m2_e0 | het | 96.3481 | 96.9965 | 95.7083 | 91.3532 | 5038 | 156 | 5040 | 226 | 15 | 6.6372 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | * | 96.1939 | 97.3404 | 95.0741 | 91.3522 | 4941 | 135 | 4941 | 256 | 54 | 21.0938 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 56.9192 | 62.7451 | 52.0833 | 91.3514 | 32 | 19 | 25 | 23 | 2 | 8.6957 | |
| dgrover-gatk | INDEL | * | map_l150_m1_e0 | het | 97.6722 | 97.8947 | 97.4508 | 91.3510 | 837 | 18 | 841 | 22 | 3 | 13.6364 | |
| jmaeng-gatk | INDEL | D1_5 | map_siren | hetalt | 92.9936 | 86.9048 | 100.0000 | 91.3507 | 73 | 11 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | hetalt | 90.9869 | 84.0909 | 99.1150 | 91.3476 | 111 | 21 | 112 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 94.1176 | 100.0000 | 88.8889 | 91.3462 | 24 | 0 | 24 | 3 | 1 | 33.3333 | |
| dgrover-gatk | SNP | ti | map_l250_m1_e0 | het | 98.2014 | 98.4164 | 97.9873 | 91.3429 | 2921 | 47 | 2921 | 60 | 16 | 26.6667 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | * | 65.5738 | 55.5556 | 80.0000 | 91.3420 | 15 | 12 | 16 | 4 | 3 | 75.0000 | |