PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26101-26150 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | map_siren | het | 80.2443 | 77.5134 | 83.1746 | 91.4579 | 1303 | 378 | 1310 | 265 | 10 | 3.7736 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e0 | het | 72.7273 | 75.0000 | 70.5882 | 91.4573 | 12 | 4 | 12 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m1_e0 | het | 92.1648 | 92.8655 | 91.4747 | 91.4533 | 794 | 61 | 794 | 74 | 48 | 64.8649 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 55.5556 | 38.4615 | 100.0000 | 91.4530 | 10 | 16 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | * | 84.4444 | 76.0000 | 95.0000 | 91.4530 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | map_l250_m0_e0 | homalt | 97.9920 | 96.9793 | 99.0260 | 91.4528 | 610 | 19 | 610 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | hetalt | 91.2281 | 83.8710 | 100.0000 | 91.4516 | 104 | 20 | 106 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | * | 78.2708 | 64.7834 | 98.8506 | 91.4496 | 344 | 187 | 344 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | homalt | 96.0000 | 100.0000 | 92.3077 | 91.4474 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 86.6667 | 76.4706 | 100.0000 | 91.4474 | 13 | 4 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | * | 78.5714 | 73.3333 | 84.6154 | 91.4474 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e0 | * | 95.5047 | 95.0280 | 95.9863 | 91.4473 | 4759 | 249 | 4759 | 199 | 57 | 28.6432 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 82.9932 | 80.2632 | 85.9155 | 91.4458 | 122 | 30 | 122 | 20 | 5 | 25.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 24.2424 | 100.0000 | 13.7931 | 91.4454 | 1 | 0 | 4 | 25 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | map_l250_m2_e1 | het | 96.3677 | 97.2719 | 95.4802 | 91.4419 | 3209 | 90 | 3211 | 152 | 11 | 7.2368 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e1 | * | 83.8208 | 83.5938 | 84.0491 | 91.4391 | 107 | 21 | 137 | 26 | 6 | 23.0769 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.4384 | 32 | 3 | 25 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e1 | * | 96.8254 | 95.3125 | 98.3871 | 91.4365 | 122 | 6 | 122 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | segdup | * | 96.5000 | 94.2408 | 98.8701 | 91.4327 | 180 | 11 | 175 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.2311 | 80.0232 | 95.8659 | 91.4316 | 5508 | 1375 | 5519 | 238 | 31 | 13.0252 | |
| ckim-dragen | SNP | * | map_l250_m2_e1 | het | 96.3314 | 96.9985 | 95.6733 | 91.4307 | 5106 | 158 | 5108 | 231 | 16 | 6.9264 | |
| ckim-dragen | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 18.1984 | 12.1359 | 36.3636 | 91.4286 | 25 | 181 | 24 | 42 | 24 | 57.1429 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 25.0000 | 20.0000 | 33.3333 | 91.4286 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 6 | 0 | 6 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | homalt | 74.4681 | 71.4286 | 77.7778 | 91.4286 | 5 | 2 | 7 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 91.4286 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 91.4286 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | C6_15 | * | het | 0.0000 | 0.0000 | 91.4286 | 0 | 7 | 0 | 3 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | het | 77.7778 | 77.7778 | 77.7778 | 91.4286 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6378 | 96.8750 | 98.4127 | 91.4286 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 33.3333 | 91.4286 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 91.4286 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 91.4286 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 91.4286 | 0 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 91.4286 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | * | 98.3003 | 98.2955 | 98.3051 | 91.4286 | 173 | 3 | 174 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9697 | 95.7265 | 98.2456 | 91.4286 | 112 | 5 | 112 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e1 | homalt | 94.1176 | 100.0000 | 88.8889 | 91.4286 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | het | 82.3529 | 87.5000 | 77.7778 | 91.4286 | 7 | 1 | 7 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 91.4286 | 17 | 2 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l125_m0_e0 | het | 75.6119 | 61.3095 | 98.6179 | 91.4278 | 5066 | 3197 | 5066 | 71 | 0 | 0.0000 | |