PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26051-26100 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I6_15 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5058 | 45 | 0 | 44 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | * | 95.5153 | 95.0355 | 96.0000 | 91.5044 | 4824 | 252 | 4824 | 201 | 59 | 29.3532 | |
| astatham-gatk | SNP | tv | segdup | * | 99.1149 | 98.4412 | 99.7979 | 91.5044 | 8399 | 133 | 8395 | 17 | 6 | 35.2941 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | homalt | 99.6825 | 100.0000 | 99.3671 | 91.5023 | 473 | 0 | 471 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | segdup | * | 98.8439 | 97.7143 | 100.0000 | 91.5010 | 171 | 4 | 171 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.4966 | 32 | 3 | 25 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 91.4961 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| anovak-vg | SNP | tv | map_l250_m2_e0 | * | 73.9754 | 80.6384 | 68.3294 | 91.4956 | 2324 | 558 | 2315 | 1073 | 260 | 24.2311 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | * | 88.9737 | 95.2381 | 83.4826 | 91.4946 | 840 | 42 | 839 | 166 | 31 | 18.6747 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 90.9091 | 85.1064 | 97.5610 | 91.4938 | 40 | 7 | 40 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m1_e0 | * | 94.3396 | 94.3396 | 94.3396 | 91.4928 | 50 | 3 | 50 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e0 | het | 79.9092 | 67.3152 | 98.3003 | 91.4899 | 346 | 168 | 347 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 12 | 0 | 12 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 12 | 0 | 12 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 91.4894 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 91.4894 | 8 | 1 | 8 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 89.6000 | 91.8033 | 87.5000 | 91.4894 | 56 | 5 | 56 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 91.4894 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l250_m2_e0 | het | 98.1270 | 98.3442 | 97.9107 | 91.4879 | 5108 | 86 | 5108 | 109 | 25 | 22.9358 | |
| ghariani-varprowl | INDEL | * | map_l125_m1_e0 | het | 91.1754 | 97.9026 | 85.3133 | 91.4837 | 1307 | 28 | 1307 | 225 | 73 | 32.4444 | |
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | * | 66.7357 | 50.1924 | 99.5456 | 91.4813 | 5477 | 5435 | 5477 | 25 | 5 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 91.4798 | 57 | 3 | 57 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.5309 | 93.0070 | 74.1758 | 91.4794 | 133 | 10 | 135 | 47 | 3 | 6.3830 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.5689 | 98.1481 | 95.0397 | 91.4793 | 477 | 9 | 479 | 25 | 1 | 4.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 71.7070 | 89.4928 | 59.8187 | 91.4779 | 247 | 29 | 198 | 133 | 8 | 6.0150 | |
| egarrison-hhga | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 91.4773 | 45 | 2 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | * | 77.9463 | 64.3545 | 98.8166 | 91.4754 | 334 | 185 | 334 | 4 | 1 | 25.0000 | |
| jlack-gatk | SNP | ti | map_l250_m0_e0 | homalt | 97.5439 | 95.6422 | 99.5227 | 91.4751 | 417 | 19 | 417 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | * | 96.0947 | 97.6744 | 94.5652 | 91.4736 | 84 | 2 | 87 | 5 | 2 | 40.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.3451 | 73.4925 | 96.2484 | 91.4731 | 3047 | 1099 | 3053 | 119 | 21 | 17.6471 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | het | 94.5578 | 98.5309 | 90.8927 | 91.4725 | 1006 | 15 | 1008 | 101 | 5 | 4.9505 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | * | 95.6014 | 97.4208 | 93.8488 | 91.4722 | 7781 | 206 | 7781 | 510 | 89 | 17.4510 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | het | 85.1353 | 81.5550 | 89.0443 | 91.4683 | 986 | 223 | 1146 | 141 | 27 | 19.1489 | |
| hfeng-pmm2 | INDEL | * | map_l100_m0_e0 | hetalt | 96.8750 | 93.9394 | 100.0000 | 91.4667 | 31 | 2 | 32 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e0 | het | 94.2428 | 98.1891 | 90.6015 | 91.4662 | 488 | 9 | 482 | 50 | 22 | 44.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 75.6665 | 62.1622 | 96.6667 | 91.4651 | 23 | 14 | 58 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 73.9161 | 59.7015 | 97.0149 | 91.4650 | 40 | 27 | 65 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | het | 48.1928 | 36.3636 | 71.4286 | 91.4634 | 4 | 7 | 5 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 52.3810 | 91.4634 | 0 | 0 | 22 | 20 | 8 | 40.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m0_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 91.4634 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7013 | 97.4359 | 100.0000 | 91.4607 | 38 | 1 | 38 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | hetalt | 93.8272 | 88.3721 | 100.0000 | 91.4607 | 38 | 5 | 38 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.8462 | 100.0000 | 88.4058 | 91.4604 | 61 | 0 | 61 | 8 | 7 | 87.5000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.4591 | 24 | 0 | 24 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l125_m2_e0 | * | 96.6195 | 98.1330 | 95.1520 | 91.4584 | 2155 | 41 | 2159 | 110 | 11 | 10.0000 | |