PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25751-25800 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.7193 | 100.0000 | 78.1250 | 91.6883 | 25 | 0 | 25 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | SNP | * | map_l250_m0_e0 | homalt | 97.8208 | 96.3434 | 99.3443 | 91.6882 | 606 | 23 | 606 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 72.8837 | 58.1081 | 97.7358 | 91.6876 | 258 | 186 | 259 | 6 | 5 | 83.3333 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | het | 95.2117 | 95.7257 | 94.7032 | 91.6862 | 5039 | 225 | 5042 | 282 | 65 | 23.0496 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | het | 94.7997 | 98.0411 | 91.7658 | 91.6857 | 1001 | 20 | 1003 | 90 | 4 | 4.4444 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.0189 | 80.4878 | 85.7143 | 91.6847 | 66 | 16 | 66 | 11 | 11 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l250_m0_e0 | homalt | 98.5600 | 97.9332 | 99.1948 | 91.6845 | 616 | 13 | 616 | 5 | 3 | 60.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.5000 | 95.1220 | 100.0000 | 91.6844 | 39 | 2 | 39 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m2_e0 | * | 82.8587 | 74.2259 | 93.7640 | 91.6841 | 1630 | 566 | 2090 | 139 | 47 | 33.8129 | |
| raldana-dualsentieon | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 91.6836 | 82 | 1 | 82 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | * | 80.0736 | 72.4343 | 89.5141 | 91.6820 | 2675 | 1018 | 2911 | 341 | 39 | 11.4370 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | het | 95.9024 | 95.6522 | 96.1538 | 91.6800 | 44 | 2 | 50 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | homalt | 71.4286 | 55.5556 | 100.0000 | 91.6796 | 430 | 344 | 430 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | het | 98.3512 | 98.5450 | 98.1582 | 91.6782 | 3251 | 48 | 3251 | 61 | 16 | 26.2295 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 62.2449 | 63.5417 | 61.0000 | 91.6771 | 122 | 70 | 122 | 78 | 63 | 80.7692 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8347 | 95.2919 | 92.4214 | 91.6756 | 506 | 25 | 500 | 41 | 15 | 36.5854 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | het | 87.9923 | 98.4375 | 79.5511 | 91.6753 | 189 | 3 | 319 | 82 | 26 | 31.7073 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 94.9121 | 99.0909 | 91.0714 | 91.6749 | 763 | 7 | 765 | 75 | 4 | 5.3333 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 94.7867 | 97.0874 | 92.5926 | 91.6731 | 100 | 3 | 100 | 8 | 1 | 12.5000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | het | 84.4311 | 73.4375 | 99.2958 | 91.6716 | 141 | 51 | 141 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.6667 | 3 | 2 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m0_e0 | homalt | 28.5714 | 16.6667 | 100.0000 | 91.6667 | 2 | 10 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 91.6667 | 1 | 3 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.6667 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.6667 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.6667 | 3 | 2 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 91.6667 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 91.6667 | 2 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | hetalt | 40.0000 | 25.0000 | 100.0000 | 91.6667 | 4 | 12 | 4 | 0 | 0 | ||
| jlack-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 91.6667 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.6667 | 2 | 1 | 2 | 0 | 0 | ||