PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24201-24250 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | homalt | 95.6387 | 92.2561 | 99.2788 | 92.8119 | 2478 | 208 | 2478 | 18 | 10 | 55.5556 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 74.0741 | 62.5000 | 90.9091 | 92.8105 | 10 | 6 | 10 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 73.5849 | 92.8087 | 0 | 0 | 39 | 14 | 9 | 64.2857 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | homalt | 94.3396 | 91.7431 | 97.0874 | 92.8073 | 100 | 9 | 100 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.1176 | 90.9091 | 97.5610 | 92.8070 | 40 | 4 | 40 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 72.0000 | 60.0000 | 90.0000 | 92.8058 | 9 | 6 | 9 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | het | 75.0000 | 60.0000 | 100.0000 | 92.8058 | 9 | 6 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | segdup | het | 99.6255 | 100.0000 | 99.2537 | 92.8034 | 83 | 0 | 133 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | segdup | * | 98.4790 | 97.7325 | 99.2369 | 92.8031 | 19094 | 443 | 18987 | 146 | 43 | 29.4521 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | homalt | 92.6495 | 88.0734 | 97.7273 | 92.8026 | 96 | 13 | 129 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 39.2857 | 92.8021 | 0 | 0 | 11 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.8990 | 91.7526 | 88.1188 | 92.8011 | 89 | 8 | 89 | 12 | 2 | 16.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 92.8007 | 82 | 1 | 82 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | segdup | * | 98.5591 | 97.7143 | 99.4186 | 92.8003 | 171 | 4 | 171 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | homalt | 74.4681 | 71.4286 | 77.7778 | 92.8000 | 5 | 2 | 7 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8000 | 9 | 6 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.8000 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8000 | 7 | 2 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8000 | 7 | 2 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.7984 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | homalt | 96.2766 | 93.7824 | 98.9071 | 92.7981 | 181 | 12 | 181 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 90.8046 | 90.8046 | 90.8046 | 92.7980 | 79 | 8 | 79 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | het | 88.6308 | 98.5965 | 80.4948 | 92.7959 | 843 | 12 | 846 | 205 | 44 | 21.4634 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.7364 | 78.3970 | 97.0612 | 92.7953 | 7160 | 1973 | 7167 | 217 | 34 | 15.6682 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.7364 | 78.3970 | 97.0612 | 92.7953 | 7160 | 1973 | 7167 | 217 | 34 | 15.6682 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | het | 92.3077 | 96.8750 | 88.1517 | 92.7937 | 186 | 6 | 186 | 25 | 5 | 20.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.7928 | 0 | 0 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 92.7928 | 0 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7928 | 8 | 0 | 8 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.5954 | 83.3333 | 96.8750 | 92.7928 | 85 | 17 | 93 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7928 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 12.5000 | 92.7928 | 0 | 0 | 1 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7914 | 47 | 0 | 47 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 64.9197 | 98.0276 | 48.5294 | 92.7910 | 497 | 10 | 495 | 525 | 34 | 6.4762 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 86.8330 | 79.0909 | 96.2552 | 92.7907 | 609 | 161 | 694 | 27 | 21 | 77.7778 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.7900 | 46 | 0 | 46 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.7885 | 30 | 5 | 30 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.3333 | 92.7885 | 0 | 0 | 14 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 55.5556 | 40.0000 | 90.9091 | 92.7869 | 20 | 30 | 20 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 37.3898 | 74.1259 | 25.0000 | 92.7864 | 106 | 37 | 111 | 333 | 7 | 2.1021 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.5455 | 100.0000 | 89.6552 | 92.7861 | 1 | 0 | 26 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 28.8000 | 20.0000 | 51.4286 | 92.7835 | 19 | 76 | 18 | 17 | 3 | 17.6471 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 37.8378 | 23.3333 | 100.0000 | 92.7835 | 7 | 23 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.7835 | 14 | 1 | 14 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7835 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7835 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | het | 85.2663 | 97.9135 | 75.5126 | 92.7832 | 1924 | 41 | 1915 | 621 | 13 | 2.0934 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 83.2909 | 81.2500 | 85.4369 | 92.7821 | 52 | 12 | 88 | 15 | 2 | 13.3333 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.7817 | 749 | 16 | 749 | 16 | 3 | 18.7500 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2446 | 91.6084 | 97.0370 | 92.7807 | 131 | 12 | 131 | 4 | 3 | 75.0000 | |