PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24051-24100 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 92.8571 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 2 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m1_e0 | * | 96.7742 | 100.0000 | 93.7500 | 92.8571 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 92.8571 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 6 | 0 | 6 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 92.8571 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.8571 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 77.7778 | 92.8571 | 0 | 0 | 7 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.7742 | 100.0000 | 93.7500 | 92.8571 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.8571 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.8571 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6301 | 98.6301 | 98.6301 | 92.8571 | 72 | 1 | 72 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 92.8571 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.8571 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 62.3377 | 53.3333 | 75.0000 | 92.8571 | 8 | 7 | 6 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 92.8571 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 92.8571 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.8571 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||