PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24001-24050 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | het | 84.9192 | 74.6057 | 98.5417 | 92.9073 | 946 | 322 | 946 | 14 | 5 | 35.7143 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | homalt | 67.2646 | 50.6757 | 100.0000 | 92.9044 | 75 | 73 | 75 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.9009 | 749 | 16 | 749 | 16 | 4 | 25.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8994 | 12 | 0 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | segdup | * | 92.1680 | 88.4817 | 96.1749 | 92.8987 | 169 | 22 | 176 | 7 | 7 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 74.1130 | 68.8073 | 80.3053 | 92.8974 | 525 | 238 | 526 | 129 | 61 | 47.2868 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.4444 | 100.0000 | 89.4737 | 92.8972 | 2 | 0 | 34 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.8968 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 70.2703 | 54.1667 | 100.0000 | 92.8962 | 13 | 11 | 13 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | * | 74.1635 | 68.7661 | 80.4805 | 92.8937 | 535 | 243 | 536 | 130 | 62 | 47.6923 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.8934 | 14 | 1 | 14 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | map_l250_m0_e0 | homalt | 97.3310 | 95.8665 | 98.8411 | 92.8933 | 603 | 26 | 597 | 7 | 5 | 71.4286 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m1_e0 | het | 81.0099 | 78.8932 | 83.2432 | 92.8928 | 613 | 164 | 616 | 124 | 3 | 2.4194 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.1550 | 92.4528 | 98.0198 | 92.8923 | 98 | 8 | 99 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4859 | 71.5686 | 97.3333 | 92.8910 | 73 | 29 | 73 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 63.0435 | 92.8903 | 0 | 0 | 29 | 17 | 8 | 47.0588 | |
| dgrover-gatk | INDEL | I6_15 | segdup | * | 99.4253 | 98.8571 | 100.0000 | 92.8894 | 173 | 2 | 173 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 92.9134 | 98.3333 | 88.0597 | 92.8875 | 59 | 1 | 59 | 8 | 1 | 12.5000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.8854 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | het | 85.4369 | 93.6170 | 78.5714 | 92.8844 | 44 | 3 | 44 | 12 | 12 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | het | 47.5000 | 31.6667 | 95.0000 | 92.8826 | 19 | 41 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | segdup | * | 97.0509 | 94.7644 | 99.4505 | 92.8823 | 181 | 10 | 181 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | segdup | het | 98.4151 | 99.3244 | 97.5223 | 92.8812 | 17200 | 117 | 17200 | 437 | 12 | 2.7460 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 92.8808 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 78.1967 | 65.8436 | 96.2555 | 92.8784 | 320 | 166 | 437 | 17 | 9 | 52.9412 | |
| dgrover-gatk | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.8776 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | * | 93.5078 | 97.9074 | 89.4865 | 92.8768 | 7720 | 165 | 7720 | 907 | 67 | 7.3870 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | het | 59.0641 | 42.6230 | 96.1538 | 92.8767 | 26 | 35 | 25 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | segdup | * | 99.0792 | 98.8483 | 99.3111 | 92.8755 | 19312 | 225 | 19317 | 134 | 17 | 12.6866 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 87.1595 | 78.3217 | 98.2456 | 92.8750 | 112 | 31 | 112 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_siren | * | 94.2920 | 95.3488 | 93.2584 | 92.8743 | 82 | 4 | 83 | 6 | 1 | 16.6667 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.8741 | 30 | 5 | 30 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 39.1304 | 25.4717 | 84.3750 | 92.8731 | 27 | 79 | 27 | 5 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 88.3191 | 83.3333 | 93.9394 | 92.8726 | 25 | 5 | 31 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 92.8713 | 36 | 5 | 36 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | homalt | 68.2081 | 51.7544 | 100.0000 | 92.8701 | 118 | 110 | 118 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | segdup | homalt | 99.4709 | 99.3658 | 99.5763 | 92.8690 | 470 | 3 | 470 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | * | 98.2916 | 98.3607 | 98.2226 | 92.8676 | 2100 | 35 | 2100 | 38 | 6 | 15.7895 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | het | 87.1287 | 95.6522 | 80.0000 | 92.8664 | 44 | 2 | 44 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | homalt | 90.5115 | 94.0000 | 87.2727 | 92.8664 | 47 | 3 | 48 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | * | 80.3694 | 72.9367 | 89.4891 | 92.8627 | 1140 | 423 | 1226 | 144 | 20 | 13.8889 | |
| gduggal-bwavard | INDEL | I6_15 | segdup | * | 68.6994 | 65.1429 | 72.6667 | 92.8605 | 114 | 61 | 109 | 41 | 40 | 97.5610 | |
| ckim-vqsr | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.8593 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.8593 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e1 | * | 95.8895 | 95.8869 | 95.8922 | 92.8591 | 746 | 32 | 747 | 32 | 5 | 15.6250 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 71.4286 | 55.5556 | 100.0000 | 92.8571 | 5 | 4 | 5 | 0 | 0 | ||