PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23201-23250 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 88.5764 | 81.8182 | 96.5517 | 93.4389 | 27 | 6 | 28 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | * | 54.9020 | 38.3562 | 96.5517 | 93.4389 | 28 | 45 | 28 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 93.4386 | 55 | 2 | 54 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l100_m0_e0 | hetalt | 80.4899 | 69.6970 | 95.2381 | 93.4375 | 23 | 10 | 20 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | segdup | * | 98.3829 | 98.6521 | 98.1152 | 93.4371 | 8417 | 115 | 8381 | 161 | 27 | 16.7702 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | homalt | 94.6903 | 92.2414 | 97.2727 | 93.4368 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | * | 88.1520 | 82.9439 | 94.0579 | 93.4361 | 3798 | 781 | 3799 | 240 | 126 | 52.5000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 15.3846 | 93.4343 | 0 | 0 | 2 | 11 | 3 | 27.2727 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 95.4545 | 93.4328 | 0 | 0 | 21 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 91.9355 | 93.4322 | 0 | 1 | 57 | 5 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e0 | het | 85.0000 | 95.7746 | 76.4045 | 93.4317 | 68 | 3 | 68 | 21 | 19 | 90.4762 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 93.4307 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 14.8148 | 93.4307 | 0 | 0 | 4 | 23 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 16.6667 | 93.4307 | 0 | 0 | 3 | 15 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | segdup | * | 97.0800 | 99.5077 | 94.7680 | 93.4258 | 8490 | 42 | 8495 | 469 | 32 | 6.8230 | |
| eyeh-varpipe | INDEL | * | map_l125_m1_e0 | hetalt | 73.9130 | 60.0000 | 96.2264 | 93.4243 | 24 | 16 | 51 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4497 | 80.3922 | 84.6154 | 93.4233 | 41 | 10 | 33 | 6 | 3 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8610 | 100.0000 | 97.7477 | 93.4222 | 1 | 0 | 217 | 5 | 2 | 40.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.4211 | 10 | 10 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 93.4211 | 13 | 1 | 13 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | hetalt | 52.6316 | 35.7143 | 100.0000 | 93.4211 | 5 | 9 | 5 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | het | 18.3007 | 11.8644 | 40.0000 | 93.4211 | 7 | 52 | 6 | 9 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 40.0000 | 93.4211 | 0 | 0 | 4 | 6 | 5 | 83.3333 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | * | 84.1534 | 79.1566 | 89.8236 | 93.4173 | 657 | 173 | 662 | 75 | 4 | 5.3333 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | homalt | 95.8509 | 93.1075 | 98.7608 | 93.4160 | 797 | 59 | 797 | 10 | 5 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.4156 | 0 | 1 | 0 | 16 | 5 | 31.2500 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m0_e0 | het | 96.9697 | 94.1176 | 100.0000 | 93.4156 | 16 | 1 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | segdup | het | 96.4604 | 95.6344 | 97.3009 | 93.4137 | 1402 | 64 | 1478 | 41 | 31 | 75.6098 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.4132 | 3 | 1 | 11 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | segdup | * | 85.3598 | 91.4894 | 80.0000 | 93.4132 | 43 | 4 | 44 | 11 | 1 | 9.0909 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 85.5814 | 100.0000 | 74.7967 | 93.4119 | 1 | 0 | 92 | 31 | 9 | 29.0323 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 59.9965 | 83.1683 | 46.9231 | 93.4110 | 84 | 17 | 61 | 69 | 13 | 18.8406 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | homalt | 33.4855 | 23.4043 | 58.8235 | 93.4109 | 11 | 36 | 10 | 7 | 1 | 14.2857 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 85.4167 | 81.1881 | 90.1099 | 93.4106 | 82 | 19 | 82 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 72.3571 | 66.6667 | 79.1096 | 93.4101 | 230 | 115 | 231 | 61 | 11 | 18.0328 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.4097 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 91.4894 | 84.3137 | 100.0000 | 93.4066 | 43 | 8 | 42 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l250_m0_e0 | het | 97.7729 | 96.3597 | 99.2282 | 93.4065 | 900 | 34 | 900 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 56.5111 | 56.6123 | 56.4103 | 93.4064 | 625 | 479 | 638 | 493 | 43 | 8.7221 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | het | 97.0435 | 97.5524 | 96.5398 | 93.4041 | 558 | 14 | 558 | 20 | 1 | 5.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | het | 83.4646 | 72.3858 | 98.5474 | 93.4041 | 1696 | 647 | 1696 | 25 | 8 | 32.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.5224 | 95.0495 | 96.0000 | 93.4037 | 96 | 5 | 96 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4028 | 19 | 0 | 19 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m1_e0 | het | 78.5714 | 73.3333 | 84.6154 | 93.4010 | 11 | 4 | 11 | 2 | 2 | 100.0000 | |