PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22451-22500 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 40.0000 | 33.3333 | 50.0000 | 93.9394 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 93.9394 | 0 | 4 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 93.9394 | 0 | 2 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.9394 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9394 | 4 | 0 | 4 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.2581 | 20.0000 | 83.3333 | 93.9394 | 5 | 20 | 5 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 75.0000 | 93.9394 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9394 | 60 | 0 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | het | 95.2381 | 90.9091 | 100.0000 | 93.9394 | 10 | 1 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.9394 | 11 | 3 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 93.9394 | 46 | 1 | 46 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.9394 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9394 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 93.9394 | 12 | 3 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 93.9394 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.9394 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m0_e0 | * | 60.7533 | 43.9130 | 98.5441 | 93.9394 | 3452 | 4409 | 3452 | 51 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 93.9394 | 82 | 1 | 82 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 93.9394 | 1 | 1 | 0 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | segdup | het | 99.2064 | 99.2775 | 99.1354 | 93.9383 | 687 | 5 | 688 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | segdup | * | 98.5591 | 97.7143 | 99.4186 | 93.9373 | 171 | 4 | 171 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | het | 49.4382 | 33.3333 | 95.6522 | 93.9314 | 22 | 44 | 22 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 94.2857 | 92.9577 | 95.6522 | 93.9314 | 66 | 5 | 66 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0931 | 90.9091 | 95.3846 | 93.9309 | 60 | 6 | 62 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 52.6316 | 93.9297 | 0 | 0 | 10 | 9 | 8 | 88.8889 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 82.3529 | 93.3333 | 73.6842 | 93.9297 | 14 | 1 | 14 | 5 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 94.1176 | 93.9286 | 0 | 1 | 64 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | * | 99.6820 | 99.4560 | 99.9091 | 93.9277 | 1097 | 6 | 1099 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 48.0349 | 35.7143 | 73.3333 | 93.9271 | 10 | 18 | 11 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.9266 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e0 | het | 78.5714 | 73.3333 | 84.6154 | 93.9252 | 11 | 4 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 93.9227 | 0 | 0 | 12 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | SNP | * | segdup | * | 98.6033 | 97.9585 | 99.2566 | 93.9219 | 27494 | 573 | 27505 | 206 | 20 | 9.7087 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.8033 | 93.3333 | 90.3226 | 93.9216 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | hetalt | 90.4198 | 84.8485 | 96.7742 | 93.9216 | 28 | 5 | 30 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e1 | het | 69.5652 | 57.1429 | 88.8889 | 93.9189 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | * | map_l250_m0_e0 | * | 66.1457 | 49.5550 | 99.4361 | 93.9169 | 1058 | 1077 | 1058 | 6 | 2 | 33.3333 | |
| jli-custom | INDEL | D16_PLUS | map_siren | het | 96.0512 | 94.8718 | 97.2603 | 93.9167 | 74 | 4 | 71 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | * | 46.3768 | 34.7826 | 69.5652 | 93.9153 | 16 | 30 | 16 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | het | 62.5000 | 55.5556 | 71.4286 | 93.9130 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 71.4286 | 93.9130 | 0 | 0 | 10 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9130 | 7 | 0 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9130 | 14 | 1 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 93.9130 | 7 | 0 | 10 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.9130 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | * | 87.8865 | 82.6252 | 93.8634 | 93.9104 | 6515 | 1370 | 6516 | 426 | 206 | 48.3568 | |
| ckim-gatk | SNP | tv | map_l250_m2_e0 | homalt | 61.7994 | 44.7172 | 100.0000 | 93.9099 | 419 | 518 | 419 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.5647 | 57.5184 | 84.8624 | 93.9078 | 547 | 404 | 555 | 99 | 45 | 45.4545 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | het | 75.9917 | 64.6851 | 92.0882 | 93.9068 | 5136 | 2804 | 5098 | 438 | 367 | 83.7900 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | * | 97.6744 | 95.4545 | 100.0000 | 93.9058 | 21 | 1 | 22 | 0 | 0 | ||