PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22201-22250 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 94.1176 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 56.0000 | 46.6667 | 70.0000 | 94.1176 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 9 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 11 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 94.1176 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 94.1176 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 94.1176 | 0 | 0 | 3 | 9 | 2 | 22.2222 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 91.6667 | 94.1176 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 57.0093 | 94.1144 | 0 | 0 | 61 | 46 | 4 | 8.6957 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | het | 91.1258 | 98.0243 | 85.1345 | 94.1114 | 5160 | 104 | 5160 | 901 | 60 | 6.6593 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.6122 | 94.1106 | 0 | 0 | 15 | 34 | 4 | 11.7647 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | het | 94.8598 | 94.8538 | 94.8658 | 94.1088 | 811 | 44 | 813 | 44 | 4 | 9.0909 | |
| qzeng-custom | SNP | ti | map_l150_m0_e0 | het | 73.7997 | 61.6049 | 92.0141 | 94.1071 | 3140 | 1957 | 3134 | 272 | 231 | 84.9265 | |
| jpowers-varprowl | INDEL | D6_15 | segdup | het | 74.3119 | 88.0435 | 64.2857 | 94.1066 | 81 | 11 | 81 | 45 | 45 | 100.0000 | |
| gduggal-snapfb | INDEL | * | segdup | het | 92.4787 | 90.9277 | 94.0836 | 94.1056 | 1333 | 133 | 1463 | 92 | 26 | 28.2609 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | * | 95.8235 | 95.2655 | 96.3881 | 94.1040 | 1489 | 74 | 2295 | 86 | 59 | 68.6047 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.9710 | 98.8304 | 97.1264 | 94.1037 | 169 | 2 | 169 | 5 | 1 | 20.0000 | |