PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22051-22100 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 63.9594 | 63.6364 | 64.2857 | 94.1909 | 7 | 4 | 9 | 5 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.6989 | 97.7918 | 93.6937 | 94.1905 | 310 | 7 | 312 | 21 | 1 | 4.7619 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 90.3904 | 93.4783 | 87.5000 | 94.1889 | 43 | 3 | 42 | 6 | 2 | 33.3333 | |
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | * | 75.7994 | 61.3194 | 99.2320 | 94.1880 | 1292 | 815 | 1292 | 10 | 2 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | segdup | homalt | 89.2779 | 95.5432 | 83.7838 | 94.1865 | 343 | 16 | 341 | 66 | 59 | 89.3939 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | * | 61.7647 | 63.6364 | 60.0000 | 94.1860 | 7 | 4 | 9 | 6 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.2381 | 90.9091 | 100.0000 | 94.1860 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.5995 | 78.4314 | 96.6667 | 94.1860 | 40 | 11 | 29 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 94.1860 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1860 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1860 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1860 | 9 | 0 | 10 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.1860 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 72.7273 | 66.6667 | 80.0000 | 94.1860 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | * | 83.2414 | 77.4059 | 90.0285 | 94.1859 | 555 | 162 | 632 | 70 | 18 | 25.7143 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 94.0364 | 97.9239 | 90.4459 | 94.1809 | 283 | 6 | 284 | 30 | 1 | 3.3333 | |
| ckim-isaac | SNP | tv | map_l250_m0_e0 | * | 62.1185 | 45.2288 | 99.1404 | 94.1804 | 346 | 419 | 346 | 3 | 1 | 33.3333 | |
| dgrover-gatk | SNP | tv | map_l250_m0_e0 | het | 96.5998 | 96.8531 | 96.3478 | 94.1784 | 554 | 18 | 554 | 21 | 2 | 9.5238 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1781 | 17 | 0 | 17 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | segdup | homalt | 99.5828 | 99.7214 | 99.4444 | 94.1766 | 358 | 1 | 358 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.1748 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.1748 | 6 | 2 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5905 | 97.7346 | 93.5385 | 94.1746 | 302 | 7 | 304 | 21 | 1 | 4.7619 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | * | 98.2427 | 99.2701 | 97.2364 | 94.1737 | 1360 | 10 | 1337 | 38 | 1 | 2.6316 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | het | 92.3788 | 96.1538 | 88.8889 | 94.1727 | 75 | 3 | 72 | 9 | 1 | 11.1111 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | * | 76.2887 | 78.7234 | 74.0000 | 94.1725 | 37 | 10 | 37 | 13 | 8 | 61.5385 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 96.6443 | 98.6301 | 94.7368 | 94.1718 | 72 | 1 | 72 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | het | 94.5436 | 98.1236 | 91.2155 | 94.1716 | 889 | 17 | 893 | 86 | 6 | 6.9767 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | * | 51.5723 | 35.9649 | 91.1111 | 94.1710 | 41 | 73 | 41 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.1708 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.1704 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.1667 | 0 | 0 | 7 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.8571 | 94.1667 | 0 | 0 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 94.1667 | 0 | 0 | 14 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0553 | 96.4706 | 97.6471 | 94.1661 | 82 | 3 | 83 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8261 | 95.7447 | 100.0000 | 94.1634 | 45 | 2 | 45 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | * | 78.0985 | 94.5098 | 66.5434 | 94.1611 | 723 | 42 | 720 | 362 | 4 | 1.1050 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.1606 | 8 | 0 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | segdup | * | 98.8658 | 98.7724 | 98.9593 | 94.1605 | 1046 | 13 | 1046 | 11 | 7 | 63.6364 | |
| jlack-gatk | SNP | tv | map_l250_m2_e1 | het | 89.2982 | 97.4555 | 82.4010 | 94.1598 | 1915 | 50 | 1915 | 409 | 18 | 4.4010 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.3333 | 92.4528 | 94.2308 | 94.1573 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1558 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 94.1558 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.1558 | 18 | 0 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1558 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 84.2105 | 94.1538 | 0 | 0 | 16 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 69.9207 | 56.4189 | 91.9178 | 94.1495 | 1336 | 1032 | 1342 | 118 | 26 | 22.0339 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | homalt | 86.9565 | 83.3333 | 90.9091 | 94.1489 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 94.1489 | 0 | 0 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e1 | het | 81.4815 | 68.7500 | 100.0000 | 94.1489 | 11 | 5 | 11 | 0 | 0 | ||