PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21151-21200 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | homalt | 85.9772 | 77.6119 | 96.3636 | 94.7267 | 52 | 15 | 53 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | segdup | het | 99.3483 | 99.2565 | 99.4403 | 94.7265 | 534 | 4 | 533 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.7250 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 95.6522 | 94.7248 | 0 | 0 | 22 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | het | 88.7434 | 85.9865 | 91.6830 | 94.7245 | 2798 | 456 | 2800 | 254 | 132 | 51.9685 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 93.8053 | 92.1739 | 95.4955 | 94.7243 | 106 | 9 | 106 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.7242 | 0 | 0 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 91.8033 | 93.3333 | 90.3226 | 94.7189 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m0_e0 | * | 93.3333 | 93.3333 | 93.3333 | 94.7183 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | * | 89.6552 | 86.6667 | 92.8571 | 94.7170 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | * | 83.6982 | 96.2092 | 74.0666 | 94.7166 | 736 | 29 | 734 | 257 | 5 | 1.9455 | |
| gduggal-bwaplat | SNP | ti | segdup | het | 98.4906 | 98.1463 | 98.8374 | 94.7165 | 11807 | 223 | 11817 | 139 | 6 | 4.3166 | |
| ckim-isaac | INDEL | I1_5 | segdup | hetalt | 92.1348 | 85.4167 | 100.0000 | 94.7165 | 41 | 7 | 41 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | het | 85.7143 | 75.0000 | 100.0000 | 94.7137 | 12 | 4 | 12 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | * | 63.0655 | 62.9371 | 63.1944 | 94.7137 | 90 | 53 | 91 | 53 | 38 | 71.6981 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1563 | 97.1698 | 97.1429 | 94.7130 | 103 | 3 | 170 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_siren | * | 92.1664 | 95.1049 | 89.4040 | 94.7129 | 136 | 7 | 135 | 16 | 2 | 12.5000 | |
| astatham-gatk | INDEL | * | segdup | hetalt | 96.8254 | 93.8462 | 100.0000 | 94.7122 | 122 | 8 | 124 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 94.7115 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 94.7115 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 93.7500 | 75.0000 | 94.7090 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.7080 | 34 | 8 | 29 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | het | 91.8919 | 94.4444 | 89.4737 | 94.7075 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | het | 99.3497 | 99.2775 | 99.4220 | 94.7071 | 687 | 5 | 688 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 94.7059 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | homalt | 95.4907 | 93.2642 | 97.8261 | 94.7020 | 180 | 13 | 180 | 4 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e0 | het | 48.4211 | 32.3944 | 95.8333 | 94.7020 | 23 | 48 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002compoundhet | het | 89.2228 | 87.2340 | 91.3043 | 94.7005 | 41 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 40.0000 | 94.6996 | 0 | 0 | 6 | 9 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | het | 97.1032 | 98.3471 | 95.8904 | 94.6986 | 119 | 2 | 140 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.6847 | 91.7526 | 83.9623 | 94.6973 | 89 | 8 | 89 | 17 | 4 | 23.5294 | |
| asubramanian-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 94.6970 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 37.8378 | 23.3333 | 100.0000 | 94.6970 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m2_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 94.6970 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m2_e1 | hetalt | 37.8378 | 23.3333 | 100.0000 | 94.6970 | 7 | 23 | 7 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 94.6970 | 7 | 0 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 89.6552 | 86.6667 | 92.8571 | 94.6970 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.6970 | 14 | 0 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | segdup | * | 95.2880 | 95.2880 | 95.2880 | 94.6959 | 182 | 9 | 182 | 9 | 5 | 55.5556 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | homalt | 99.1453 | 100.0000 | 98.3051 | 94.6942 | 116 | 0 | 116 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.6667 | 92.8571 | 81.2500 | 94.6932 | 26 | 2 | 26 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | segdup | * | 98.1687 | 99.3085 | 97.0548 | 94.6921 | 8473 | 59 | 8469 | 257 | 8 | 3.1128 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.6919 | 56 | 1 | 56 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.6919 | 56 | 1 | 56 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | * | 92.9666 | 96.5808 | 89.6132 | 94.6918 | 2062 | 73 | 2062 | 239 | 29 | 12.1339 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 85.2476 | 92.3077 | 79.1908 | 94.6916 | 132 | 11 | 137 | 36 | 9 | 25.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | hetalt | 86.9872 | 79.0698 | 96.6667 | 94.6903 | 34 | 9 | 29 | 1 | 0 | 0.0000 | |