PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21001-21050 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.7917 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.7917 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l150_m0_e0 | * | 60.1129 | 43.3637 | 97.9437 | 94.7907 | 1810 | 2364 | 1810 | 38 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.7894 | 45 | 0 | 45 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.7883 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | het | 80.4615 | 67.9221 | 98.6792 | 94.7881 | 523 | 247 | 523 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | * | map_l250_m0_e0 | het | 68.2076 | 51.9256 | 99.3647 | 94.7881 | 782 | 724 | 782 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 94.7853 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.7846 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e0 | het | 79.6631 | 66.5996 | 99.1018 | 94.7845 | 331 | 166 | 331 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 62.6263 | 88.5714 | 48.4375 | 94.7840 | 31 | 4 | 31 | 33 | 6 | 18.1818 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7826 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7826 | 6 | 0 | 6 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 66.6667 | 55.5556 | 83.3333 | 94.7826 | 5 | 4 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 94.7826 | 0 | 0 | 6 | 6 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 94.7826 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 91.1641 | 96.1538 | 86.6667 | 94.7826 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | het | 96.4428 | 96.6667 | 96.2199 | 94.7821 | 203 | 7 | 280 | 11 | 5 | 45.4545 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | het | 80.0469 | 67.1260 | 99.1279 | 94.7816 | 341 | 167 | 341 | 3 | 1 | 33.3333 | |
| ckim-vqsr | SNP | tv | map_l150_m0_e0 | homalt | 29.9616 | 17.6205 | 100.0000 | 94.7814 | 234 | 1094 | 234 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | * | 95.6954 | 94.7541 | 96.6555 | 94.7800 | 289 | 16 | 289 | 10 | 3 | 30.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 56.2500 | 94.7798 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 94.7791 | 13 | 2 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.7788 | 59 | 1 | 59 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m0_e0 | het | 70.7202 | 55.4344 | 97.6456 | 94.7782 | 1576 | 1267 | 1576 | 38 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.7781 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | segdup | * | 98.8248 | 98.0778 | 99.5833 | 94.7773 | 8368 | 164 | 8364 | 35 | 5 | 14.2857 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 95.9016 | 96.6942 | 95.1220 | 94.7771 | 117 | 4 | 117 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | * | segdup | * | 96.6734 | 97.6526 | 95.7138 | 94.7770 | 2496 | 60 | 2568 | 115 | 34 | 29.5652 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.1905 | 52.7778 | 27.5362 | 94.7767 | 19 | 17 | 19 | 50 | 3 | 6.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 94.6948 | 97.2973 | 92.2280 | 94.7767 | 180 | 5 | 178 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7761 | 7 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7761 | 7 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 95.4545 | 94.7743 | 0 | 0 | 42 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | * | segdup | * | 99.0625 | 99.1784 | 98.9470 | 94.7737 | 2535 | 21 | 2537 | 27 | 10 | 37.0370 | |
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | * | 36.2073 | 22.1125 | 99.8585 | 94.7728 | 2822 | 9940 | 2822 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.7712 | 0 | 0 | 24 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | homalt | 52.0000 | 35.1351 | 100.0000 | 94.7712 | 13 | 24 | 8 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 25.0000 | 94.7712 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | map_l250_m0_e0 | het | 63.7441 | 47.0280 | 98.8971 | 94.7702 | 269 | 303 | 269 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | * | 96.4497 | 95.3216 | 97.6048 | 94.7698 | 163 | 8 | 163 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 93.1984 | 97.2973 | 89.4309 | 94.7682 | 108 | 3 | 110 | 13 | 1 | 7.6923 | |
| dgrover-gatk | INDEL | * | segdup | hetalt | 96.8254 | 93.8462 | 100.0000 | 94.7679 | 122 | 8 | 124 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 74.6404 | 61.7021 | 94.4444 | 94.7674 | 29 | 18 | 17 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | het | 86.2745 | 91.6667 | 81.4815 | 94.7674 | 22 | 2 | 22 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 96.7930 | 97.0760 | 96.5116 | 94.7673 | 166 | 5 | 166 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 71.4286 | 94.7664 | 0 | 0 | 20 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | homalt | 81.8840 | 70.1220 | 98.3871 | 94.7657 | 115 | 49 | 122 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | het | 78.0000 | 63.9344 | 100.0000 | 94.7651 | 39 | 22 | 39 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 94.7644 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |