PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20801-20850 / 86044 show all | |||||||||||||||
jlack-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 94.8990 | 45 | 0 | 45 | 3 | 2 | 66.6667 | |
hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8980 | 5 | 0 | 5 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | * | 57.8534 | 59.0909 | 56.6667 | 94.8980 | 13 | 9 | 17 | 13 | 7 | 53.8462 | |
eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 94.8980 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 57.3529 | 42.8571 | 86.6667 | 94.8980 | 6 | 8 | 13 | 2 | 1 | 50.0000 | |
ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 94.8980 | 6 | 0 | 5 | 0 | 0 | ||
gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | het | 89.0022 | 96.2264 | 82.7869 | 94.8975 | 102 | 4 | 101 | 21 | 4 | 19.0476 | |
gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 94.8936 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
gduggal-snapfb | INDEL | * | map_l125_m1_e0 | hetalt | 76.4505 | 70.0000 | 84.2105 | 94.8925 | 28 | 12 | 16 | 3 | 1 | 33.3333 | |
ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 69.2308 | 94.7368 | 94.8925 | 18 | 8 | 18 | 1 | 1 | 100.0000 | |
jmaeng-gatk | INDEL | D16_PLUS | map_siren | * | 92.7526 | 94.4056 | 91.1565 | 94.8923 | 135 | 8 | 134 | 13 | 2 | 15.3846 | |
jpowers-varprowl | SNP | ti | map_l250_m0_e0 | * | 93.0946 | 92.9927 | 93.1968 | 94.8911 | 1274 | 96 | 1274 | 93 | 19 | 20.4301 | |
qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 77.9221 | 71.4286 | 85.7143 | 94.8905 | 5 | 2 | 6 | 1 | 1 | 100.0000 | |
qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.8905 | 6 | 4 | 7 | 0 | 0 | ||
gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e0 | homalt | 63.6364 | 46.6667 | 100.0000 | 94.8905 | 7 | 8 | 7 | 0 | 0 | ||
jlack-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.8421 | 100.0000 | 93.8776 | 94.8905 | 46 | 0 | 46 | 3 | 2 | 66.6667 | |
hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 94.8905 | 7 | 1 | 7 | 0 | 0 | ||
ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.8905 | 7 | 2 | 7 | 0 | 0 | ||
bgallagher-sentieon | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8905 | 7 | 0 | 7 | 0 | 0 | ||
astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8905 | 7 | 0 | 7 | 0 | 0 | ||
gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | * | 95.1009 | 96.4912 | 93.7500 | 94.8882 | 165 | 6 | 165 | 11 | 1 | 9.0909 | |
ghariani-varprowl | SNP | tv | map_l250_m0_e0 | het | 88.7470 | 97.2028 | 81.6446 | 94.8874 | 556 | 16 | 556 | 125 | 12 | 9.6000 | |
gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | het | 10.2564 | 6.6667 | 22.2222 | 94.8864 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | * | 97.1095 | 97.3451 | 96.8750 | 94.8855 | 110 | 3 | 186 | 6 | 5 | 83.3333 | |
gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | * | 58.5732 | 59.0909 | 58.0645 | 94.8845 | 13 | 9 | 18 | 13 | 7 | 53.8462 | |
ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 94.8845 | 0 | 0 | 31 | 0 | 0 | ||
jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 87.5000 | 96.5517 | 80.0000 | 94.8830 | 28 | 1 | 28 | 7 | 0 | 0.0000 | |
asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 85.1852 | 76.6667 | 95.8333 | 94.8827 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.3684 | 92.2222 | 83.0000 | 94.8823 | 83 | 7 | 83 | 17 | 4 | 23.5294 | |
astatham-gatk | INDEL | D1_5 | segdup | * | 99.2297 | 99.1840 | 99.2754 | 94.8823 | 1094 | 9 | 1096 | 8 | 2 | 25.0000 | |
asubramanian-gatk | SNP | tv | map_l150_m2_e1 | * | 39.5063 | 24.6305 | 99.7534 | 94.8804 | 2833 | 8669 | 2832 | 7 | 1 | 14.2857 | |
astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.8800 | 32 | 0 | 32 | 0 | 0 | ||
hfeng-pmm1 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.8780 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
ciseli-custom | INDEL | C1_5 | * | * | 32.7774 | 40.0000 | 27.7641 | 94.8771 | 4 | 6 | 339 | 882 | 161 | 18.2540 | |
jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.8763 | 58 | 2 | 58 | 0 | 0 | ||
rpoplin-dv42 | INDEL | I1_5 | segdup | het | 98.7928 | 98.6989 | 98.8868 | 94.8759 | 531 | 7 | 533 | 6 | 5 | 83.3333 | |
gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e1 | het | 78.0000 | 63.9344 | 100.0000 | 94.8752 | 39 | 22 | 39 | 0 | 0 | ||
gduggal-snapplat | SNP | * | map_l250_m2_e0 | het | 87.7154 | 84.4628 | 91.2284 | 94.8727 | 4387 | 807 | 4389 | 422 | 202 | 47.8673 | |
gduggal-snapplat | INDEL | * | map_l150_m2_e1 | * | 80.1656 | 73.0368 | 88.8365 | 94.8724 | 1051 | 388 | 1130 | 142 | 20 | 14.0845 | |
gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 94.8718 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 94.8718 | 18 | 1 | 12 | 0 | 0 | ||
gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.8718 | 6 | 2 | 6 | 0 | 0 | ||
gduggal-bwavard | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 94.8718 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8718 | 4 | 0 | 4 | 0 | 0 | ||
qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 94.8718 | 0 | 0 | 2 | 0 | 0 | ||
raldana-dualsentieon | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8718 | 6 | 0 | 6 | 0 | 0 | ||
mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.8718 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.8718 | 0 | 0 | 2 | 0 | 0 | ||
ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.8718 | 0 | 0 | 2 | 0 | 0 |