PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20701-20750 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 94.3820 | 89.3617 | 100.0000 | 94.9766 | 42 | 5 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9749 | 20 | 1 | 20 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m0_e0 | * | 87.7193 | 89.2857 | 86.2069 | 94.9740 | 25 | 3 | 25 | 4 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l250_m0_e0 | homalt | 67.7742 | 51.3761 | 99.5475 | 94.9738 | 224 | 212 | 220 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | segdup | * | 98.5186 | 97.8083 | 99.2394 | 94.9737 | 8345 | 187 | 8350 | 64 | 11 | 17.1875 | |
| ckim-gatk | INDEL | D6_15 | segdup | * | 95.3368 | 96.3351 | 94.3590 | 94.9729 | 184 | 7 | 184 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 33.3333 | 94.9721 | 0 | 0 | 3 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 94.1176 | 100.0000 | 88.8889 | 94.9721 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | * | 63.1351 | 56.8093 | 71.0462 | 94.9719 | 292 | 222 | 292 | 119 | 60 | 50.4202 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9704 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1736 | 100.0000 | 98.3607 | 94.9670 | 60 | 0 | 60 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | het | 98.9797 | 99.0706 | 98.8889 | 94.9664 | 533 | 5 | 534 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.9657 | 22 | 0 | 22 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_siren | * | 93.3991 | 94.4056 | 92.4138 | 94.9653 | 135 | 8 | 134 | 11 | 2 | 18.1818 | |
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | het | 62.3303 | 45.4974 | 98.9334 | 94.9642 | 2319 | 2778 | 2319 | 25 | 10 | 40.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 94.9640 | 8 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.9640 | 14 | 0 | 14 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | * | 22.8571 | 14.2857 | 57.1429 | 94.9640 | 4 | 24 | 4 | 3 | 1 | 33.3333 | |
| ckim-vqsr | SNP | * | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.9640 | 14 | 28 | 14 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.9640 | 14 | 28 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | segdup | * | 99.5471 | 99.5467 | 99.5475 | 94.9619 | 1098 | 5 | 1100 | 5 | 2 | 40.0000 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | * | 90.1625 | 92.8377 | 87.6372 | 94.9594 | 1024 | 79 | 1198 | 169 | 138 | 81.6568 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.9565 | 58 | 2 | 58 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.7586 | 94.9565 | 0 | 0 | 91 | 54 | 38 | 70.3704 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.9555 | 17 | 4 | 17 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.9541 | 11 | 0 | 11 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4312 | 90.9091 | 73.7430 | 94.9535 | 130 | 13 | 132 | 47 | 9 | 19.1489 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 85.1291 | 77.3913 | 94.5860 | 94.9534 | 267 | 78 | 297 | 17 | 14 | 82.3529 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | * | 76.3496 | 93.1034 | 64.7059 | 94.9525 | 54 | 4 | 55 | 30 | 6 | 20.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 80.0000 | 94.9495 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 66.6667 | 51.8519 | 93.3333 | 94.9495 | 14 | 13 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9495 | 20 | 1 | 20 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.9495 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.9495 | 5 | 0 | 5 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.2728 | 88.8112 | 66.8367 | 94.9485 | 127 | 16 | 131 | 65 | 9 | 13.8462 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 93.0049 | 97.5207 | 88.8889 | 94.9457 | 118 | 3 | 120 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 94.9431 | 40 | 4 | 40 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.9416 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 22.9630 | 94.9400 | 0 | 0 | 31 | 104 | 36 | 34.6154 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.1154 | 94.9392 | 0 | 0 | 75 | 29 | 27 | 93.1034 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 94.9389 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 53.2962 | 53.7725 | 52.8282 | 94.9386 | 1461 | 1256 | 1485 | 1326 | 114 | 8.5973 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | het | 95.4545 | 94.5946 | 96.3303 | 94.9373 | 105 | 6 | 105 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | het | 85.7143 | 100.0000 | 75.0000 | 94.9367 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 94.9367 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 60.0000 | 75.0000 | 94.9367 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 55.5556 | 94.9343 | 0 | 0 | 90 | 72 | 8 | 11.1111 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0858 | 71.4286 | 51.8519 | 94.9343 | 10 | 4 | 14 | 13 | 7 | 53.8462 | |