PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19801-19850 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | map_l250_m2_e0 | * | 75.7461 | 64.0330 | 92.7037 | 95.4455 | 5049 | 2836 | 5006 | 394 | 328 | 83.2487 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.4447 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 53.1250 | 95.4416 | 0 | 0 | 17 | 15 | 13 | 86.6667 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 95.4416 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.2746 | 87.2549 | 66.1871 | 95.4411 | 89 | 13 | 92 | 47 | 3 | 6.3830 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | homalt | 96.7898 | 97.3913 | 96.1957 | 95.4410 | 112 | 3 | 177 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.4397 | 0 | 0 | 42 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.1304 | 91.1111 | 87.2340 | 95.4369 | 82 | 8 | 82 | 12 | 4 | 33.3333 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.7143 | 78.5714 | 94.2857 | 95.4368 | 33 | 9 | 33 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 90.9091 | 90.9091 | 90.9091 | 95.4357 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.4357 | 11 | 0 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m1_e0 | * | 71.1864 | 77.7778 | 65.6250 | 95.4351 | 21 | 6 | 21 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.4338 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | * | 95.7265 | 96.5517 | 94.9153 | 95.4334 | 56 | 2 | 56 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.8541 | 98.2759 | 97.4359 | 95.4333 | 114 | 2 | 114 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 66.9905 | 53.7415 | 88.9096 | 95.4327 | 948 | 816 | 954 | 119 | 18 | 15.1261 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 88.5324 | 96.0396 | 82.1138 | 95.4326 | 97 | 4 | 101 | 22 | 2 | 9.0909 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | * | 42.4242 | 29.1667 | 77.7778 | 95.4315 | 7 | 17 | 7 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 72.2222 | 95.4315 | 0 | 0 | 13 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | het | 10.2564 | 6.6667 | 22.2222 | 95.4315 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | map_l250_m0_e0 | * | 67.3632 | 63.4660 | 71.7703 | 95.4310 | 1355 | 780 | 1350 | 531 | 99 | 18.6441 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m2_e0 | * | 96.8254 | 99.4565 | 94.3299 | 95.4299 | 183 | 1 | 183 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.4286 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.4286 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.4286 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4286 | 0 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 95.4277 | 113 | 3 | 113 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 93.3921 | 93.8053 | 92.9825 | 95.4272 | 106 | 7 | 106 | 8 | 1 | 12.5000 | |
| ckim-vqsr | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 95.4267 | 81 | 2 | 81 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | segdup | hetalt | 85.5777 | 75.3846 | 98.9583 | 95.4264 | 98 | 32 | 95 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5000 | 95.9016 | 99.1525 | 95.4264 | 117 | 5 | 117 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | het | 40.8243 | 25.6695 | 99.6644 | 95.4254 | 1783 | 5163 | 1782 | 6 | 1 | 16.6667 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.4248 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 18.4466 | 95.4243 | 0 | 0 | 19 | 84 | 24 | 28.5714 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 18.4466 | 95.4243 | 0 | 0 | 19 | 84 | 24 | 28.5714 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | * | 92.2805 | 91.6591 | 92.9104 | 95.4235 | 1011 | 92 | 996 | 76 | 57 | 75.0000 | |
| astatham-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.4233 | 20 | 1 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.8571 | 86.6667 | 100.0000 | 95.4225 | 13 | 2 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | * | 95.5075 | 94.0984 | 96.9595 | 95.4215 | 287 | 18 | 287 | 9 | 3 | 33.3333 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 95.4210 | 12 | 9 | 31 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6102 | 66.6667 | 95.7672 | 95.4210 | 2 | 1 | 362 | 16 | 4 | 25.0000 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | het | 37.0075 | 26.5060 | 61.2903 | 95.4210 | 22 | 61 | 19 | 12 | 1 | 8.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.5254 | 96.4286 | 87.0968 | 95.4210 | 27 | 1 | 27 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.4198 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4198 | 6 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l150_m1_e0 | * | 96.5735 | 96.1136 | 97.0378 | 95.4187 | 1286 | 52 | 1769 | 54 | 37 | 68.5185 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 60.0000 | 56.2500 | 64.2857 | 95.4173 | 9 | 7 | 18 | 10 | 2 | 20.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.0909 | 95.4167 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |