PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19701-19750 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 59.2593 | 53.3333 | 66.6667 | 95.4925 | 8 | 7 | 18 | 9 | 2 | 22.2222 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e0 | het | 76.9231 | 66.6667 | 90.9091 | 95.4918 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | het | 96.0000 | 97.1429 | 94.8837 | 95.4908 | 204 | 6 | 204 | 11 | 2 | 18.1818 | |
| dgrover-gatk | INDEL | I1_5 | segdup | het | 99.1652 | 99.2565 | 99.0741 | 95.4899 | 534 | 4 | 535 | 5 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | C6_15 | * | * | 20.0000 | 14.2857 | 33.3333 | 95.4887 | 1 | 6 | 2 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 95.4887 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 81.4815 | 73.3333 | 91.6667 | 95.4887 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.4348 | 95.4858 | 0 | 0 | 14 | 32 | 4 | 12.5000 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | * | 74.6091 | 62.6419 | 92.2286 | 95.4856 | 4524 | 2698 | 4486 | 378 | 314 | 83.0688 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | het | 74.0028 | 99.1736 | 59.0226 | 95.4854 | 120 | 1 | 157 | 109 | 17 | 15.5963 | |
| gduggal-bwaplat | INDEL | * | map_l100_m1_e0 | hetalt | 64.1304 | 47.5806 | 98.3333 | 95.4853 | 59 | 65 | 59 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.0926 | 97.2973 | 98.9011 | 95.4850 | 180 | 5 | 180 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 95.4839 | 7 | 2 | 7 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.1667 | 73.0769 | 86.3636 | 95.4825 | 19 | 7 | 19 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 95.4823 | 0 | 0 | 37 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.4802 | 8 | 1 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | het | 68.7500 | 73.3333 | 64.7059 | 95.4787 | 11 | 4 | 11 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.4783 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 96.0000 | 98.2456 | 93.8547 | 95.4775 | 168 | 3 | 168 | 11 | 1 | 9.0909 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | hetalt | 87.8049 | 78.2609 | 100.0000 | 95.4774 | 18 | 5 | 18 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e1 | * | 50.7042 | 33.9623 | 100.0000 | 95.4774 | 18 | 35 | 18 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m0_e0 | homalt | 62.4606 | 45.4128 | 100.0000 | 95.4774 | 198 | 238 | 198 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4733 | 11 | 0 | 11 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | het | 42.5209 | 27.0270 | 99.6439 | 95.4728 | 1960 | 5292 | 1959 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4726 | 57 | 0 | 57 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.8723 | 95.4721 | 0 | 0 | 46 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.2473 | 92.2222 | 86.4583 | 95.4717 | 83 | 7 | 83 | 13 | 4 | 30.7692 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 95.8333 | 100.0000 | 92.0000 | 95.4710 | 22 | 0 | 23 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 95.4674 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | homalt | 97.3684 | 96.5217 | 98.2301 | 95.4673 | 111 | 4 | 111 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 91.7369 | 89.4737 | 94.1176 | 95.4667 | 17 | 2 | 16 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 91.0714 | 85.0000 | 98.0769 | 95.4664 | 51 | 9 | 51 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4660 | 0 | 0 | 18 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | * | 97.2826 | 96.7568 | 97.8142 | 95.4658 | 179 | 6 | 179 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.4654 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4654 | 17 | 0 | 19 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | het | 96.7213 | 96.7213 | 96.7213 | 95.4647 | 118 | 4 | 118 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | * | 56.9106 | 55.5556 | 58.3333 | 95.4631 | 10 | 8 | 14 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4628 | 0 | 0 | 25 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4628 | 0 | 0 | 25 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l250_m2_e1 | * | 75.9076 | 64.2294 | 92.7764 | 95.4610 | 5130 | 2857 | 5086 | 396 | 330 | 83.3333 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | * | 97.8261 | 97.2973 | 98.3607 | 95.4602 | 180 | 5 | 180 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | segdup | * | 95.3193 | 98.8669 | 92.0175 | 95.4565 | 1047 | 12 | 1049 | 91 | 3 | 3.2967 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 11 | 0 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.4545 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 95.4545 | 1 | 4 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.4545 | 2 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 5.6604 | 2.9126 | 100.0000 | 95.4545 | 6 | 200 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 2 | 1 | 0 | 0 | ||