PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
19651-19700 / 86044 show all
hfeng-pmm2INDELI6_15map_l150_m2_e1het
82.7586
75.0000
92.3077
95.5172
1241211
100.0000
gduggal-bwavardINDELD16_PLUSmap_l150_m2_e1het
76.9231
93.7500
65.2174
95.5166
1511582
25.0000
hfeng-pmm1INDELI6_15map_l125_m0_e0*
72.0000
60.0000
90.0000
95.5157
96911
100.0000
astatham-gatkINDELI1_5map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
95.5157
1001000
ltrigg-rtg1INDELI1_5map_l125_m2_e0hetalt
97.2973
94.7368
100.0000
95.5157
1812000
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
92.5926
95.5150
002522
100.0000
hfeng-pmm3INDELD16_PLUSmap_l150_m1_e0*
87.5000
93.3333
82.3529
95.5145
1411430
0.0000
gduggal-snapplatINDELD6_15map_l125_m2_e1*
44.8505
31.2500
79.4118
95.5145
40882771
14.2857
hfeng-pmm1INDELI16_PLUSsegduphet
100.0000
100.0000
100.0000
95.5140
2402400
egarrison-hhgaINDELI1_5map_l250_m2_e1homalt
95.7447
97.8261
93.7500
95.5140
4514531
33.3333
dgrover-gatkINDELI6_15map_l150_m1_e0het
89.6552
86.6667
92.8571
95.5128
1321311
100.0000
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
95.5128
00700
jmaeng-gatkINDELD6_15map_l150_m2_e1het
97.9167
100.0000
95.9184
95.5128
4704720
0.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_51to200*
93.3333
87.5000
100.0000
95.5128
71700
gduggal-snapplatINDELI1_5map_l150_m2_e0*
82.6518
77.8420
88.0952
95.5115
404115407552
3.6364
ckim-dragenINDELI6_15map_l150_m2_e1*
98.1132
96.2963
100.0000
95.5095
2612600
gduggal-bwafbSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
93.3333
93.3333
93.3333
95.5090
1411411
100.0000
eyeh-varpipeINDELC1_5map_l100_m2_e0het
0.0000
0.0000
86.8421
95.5083
003352
40.0000
dgrover-gatkINDELD6_15map_l150_m0_e0het
100.0000
100.0000
100.0000
95.5056
2002000
dgrover-gatkINDEL*map_l150_m2_e0hetalt
97.5610
95.2381
100.0000
95.5056
2012000
gduggal-bwavardINDELD16_PLUSmap_l125_m1_e0het
75.0000
90.0000
64.2857
95.5056
18218102
20.0000
cchapple-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
0.0000
0.0000
66.6667
95.5056
00841
25.0000
ciseli-customINDELD16_PLUSmap_l125_m0_e0het
61.5385
44.4444
100.0000
95.5056
45400
gduggal-snapvardINDELI6_15map_l250_m0_e0het
0.0000
0.0000
37.5000
95.5056
00353
60.0000
jmaeng-gatkINDELD6_15map_l150_m2_e0het
97.8723
100.0000
95.8333
95.5056
4604620
0.0000
ndellapenna-hhgaINDELD16_PLUSmap_l250_m2_e0het
85.7143
100.0000
75.0000
95.5056
30310
0.0000
eyeh-varpipeINDELC6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.0000
81.6327
95.5046
004099
100.0000
hfeng-pmm2INDELD16_PLUSmap_l100_m0_e0*
85.2459
92.8571
78.7879
95.5041
2622670
0.0000
cchapple-customINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
95.5039
002900
ckim-dragenINDELD16_PLUSmap_l100_m2_e1*
82.6291
90.7216
75.8621
95.5021
88988285
17.8571
hfeng-pmm1INDELI16_PLUSmap_l100_m2_e1*
92.3077
92.3077
92.3077
95.5017
2422420
0.0000
eyeh-varpipeINDELC1_5map_l100_m2_e1het
0.0000
0.0000
87.1795
95.5017
003452
40.0000
ckim-gatkINDELD6_15map_l150_m0_e0*
95.5224
100.0000
91.4286
95.5013
3203230
0.0000
eyeh-varpipeINDEL*map_l250_m2_e1homalt
96.8318
97.4138
96.2567
95.5005
113318077
100.0000
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.0000
41.7614
95.5004
0114720516
7.8049
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
41.7614
95.5004
0114720516
7.8049
gduggal-bwafbINDEL*map_l250_m2_e0het
95.1279
92.8571
97.5124
95.5003
1951519650
0.0000
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.0000
45.6233
95.4980
0117220516
7.8049
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
45.6233
95.4980
0117220516
7.8049
hfeng-pmm2INDELD16_PLUSmap_l150_m2_e0het
91.4286
100.0000
84.2105
95.4976
1601630
0.0000
ckim-gatkINDELD6_15map_l150_m1_e0het
95.1220
100.0000
90.6977
95.4974
3903940
0.0000
ckim-dragenINDELD1_5map_l250_m1_e0*
95.0825
96.4912
93.7143
95.4967
1656164112
18.1818
qzeng-customINDELI16_PLUSmap_l250_m1_e0het
75.0000
100.0000
60.0000
95.4955
10320
0.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_51to200homalt
93.3333
93.3333
93.3333
95.4955
1411410
0.0000
asubramanian-gatkINDELD16_PLUSmap_l100_m1_e0*
87.2093
86.2069
88.2353
95.4955
751275103
30.0000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_triTR_51to200het
33.3333
100.0000
20.0000
95.4955
10140
0.0000
jlack-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
69.6774
79.4118
62.0690
95.4946
541454333
9.0909
jpowers-varprowlSNPtvmap_l250_m0_e0homalt
95.7672
93.7824
97.8378
95.4944
1811218140
0.0000
gduggal-bwafbINDELI1_5map_l250_m2_e0homalt
97.8261
100.0000
95.7447
95.4938
4504521
50.0000
cchapple-customINDELD6_15map_l250_m1_e0*
95.0000
100.0000
90.4762
95.4936
1801920
0.0000