PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19601-19650 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 66.2142 | 52.8967 | 88.4937 | 95.5535 | 420 | 374 | 423 | 55 | 7 | 12.7273 | |
| jpowers-varprowl | INDEL | I1_5 | segdup | het | 91.4882 | 95.1673 | 88.0829 | 95.5527 | 512 | 26 | 510 | 69 | 56 | 81.1594 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | het | 95.7447 | 97.8261 | 93.7500 | 95.5514 | 45 | 1 | 45 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.4795 | 97.7778 | 97.1831 | 95.5514 | 44 | 1 | 69 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 94.7368 | 95.5504 | 0 | 0 | 18 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m0_e0 | * | 85.7143 | 80.0000 | 92.3077 | 95.5479 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 93.4498 | 93.8596 | 93.0435 | 95.5461 | 107 | 7 | 107 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 95.5429 | 37 | 5 | 39 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | homalt | 96.4912 | 95.6522 | 97.3451 | 95.5424 | 110 | 5 | 110 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.5414 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.5414 | 21 | 2 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 100.0000 | 95.5414 | 0 | 0 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.5414 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 57.1429 | 95.5414 | 0 | 0 | 4 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l150_m2_e1 | hetalt | 78.9474 | 65.2174 | 100.0000 | 95.5414 | 15 | 8 | 14 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdup | het | 90.8046 | 97.6879 | 84.8276 | 95.5414 | 676 | 16 | 861 | 154 | 123 | 79.8701 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.5414 | 21 | 2 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.5399 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | segdup | hetalt | 99.1597 | 100.0000 | 98.3333 | 95.5390 | 2 | 0 | 59 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 95.5381 | 34 | 8 | 17 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | segdup | het | 97.8517 | 97.1439 | 98.5698 | 95.5379 | 5136 | 151 | 5100 | 74 | 15 | 20.2703 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | het | 80.0000 | 68.2540 | 96.6292 | 95.5366 | 86 | 40 | 86 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 40.0000 | 95.5357 | 0 | 0 | 2 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.5357 | 2 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 95.5357 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 20.0000 | 95.5357 | 0 | 0 | 1 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5357 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 60.0000 | 95.5357 | 0 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m0_e0 | * | 92.5591 | 97.1533 | 88.3798 | 95.5349 | 1331 | 39 | 1331 | 175 | 20 | 11.4286 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.5335 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m0_e0 | het | 34.7826 | 22.6415 | 75.0000 | 95.5307 | 12 | 41 | 12 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 95.5307 | 0 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m2_e0 | * | 96.5204 | 96.3746 | 96.6667 | 95.5291 | 319 | 12 | 319 | 11 | 4 | 36.3636 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.3913 | 96.5517 | 98.2456 | 95.5277 | 112 | 4 | 112 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m2_e1 | * | 92.3077 | 88.8889 | 96.0000 | 95.5277 | 24 | 3 | 24 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 80.6667 | 95.5264 | 0 | 0 | 121 | 29 | 2 | 6.8966 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 64.2322 | 80.3030 | 53.5211 | 95.5261 | 53 | 13 | 38 | 33 | 1 | 3.0303 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5224 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 95.5224 | 9 | 5 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.5224 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5224 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.5224 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.5224 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 95.5224 | 9 | 5 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 95.5224 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | * | 82.8676 | 78.1544 | 88.1857 | 95.5224 | 415 | 116 | 418 | 56 | 2 | 3.5714 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 96.9697 | 100.0000 | 94.1176 | 95.5204 | 32 | 0 | 32 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m2_e1 | * | 96.8421 | 99.4595 | 94.3590 | 95.5203 | 184 | 1 | 184 | 11 | 1 | 9.0909 | |