PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19501-19550 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 95.6000 | 11 | 2 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | * | 72.3894 | 57.0432 | 99.0315 | 95.5984 | 409 | 308 | 409 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 95.5982 | 37 | 6 | 39 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 95.5975 | 8 | 1 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 73.1707 | 75.0000 | 71.4286 | 95.5975 | 3 | 1 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | het | 57.4627 | 63.6364 | 52.3810 | 95.5975 | 7 | 4 | 11 | 10 | 5 | 50.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | hetalt | 88.3117 | 79.0698 | 100.0000 | 95.5959 | 34 | 9 | 17 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 55.7276 | 58.8235 | 52.9412 | 95.5959 | 10 | 7 | 9 | 8 | 5 | 62.5000 | |
| jlack-gatk | INDEL | * | segdup | * | 95.2733 | 98.4742 | 92.2739 | 95.5954 | 2517 | 39 | 2520 | 211 | 15 | 7.1090 | |
| anovak-vg | INDEL | * | map_l250_m2_e0 | homalt | 72.3983 | 74.7826 | 70.1613 | 95.5950 | 86 | 29 | 87 | 37 | 34 | 91.8919 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.5947 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.5947 | 20 | 1 | 20 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | het | 95.1515 | 92.8910 | 97.5248 | 95.5943 | 196 | 15 | 197 | 5 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.6740 | 88.1188 | 64.7887 | 95.5942 | 89 | 12 | 92 | 50 | 7 | 14.0000 | |
| jli-custom | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.5932 | 51 | 1 | 52 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 91.0714 | 85.0000 | 98.0769 | 95.5932 | 51 | 9 | 51 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.5923 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 80.0000 | 87.5000 | 73.6842 | 95.5916 | 14 | 2 | 14 | 5 | 2 | 40.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 45.4362 | 49.0690 | 42.3041 | 95.5909 | 448 | 465 | 459 | 626 | 33 | 5.2716 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | * | 96.0650 | 98.9613 | 93.3333 | 95.5900 | 1048 | 11 | 1050 | 75 | 3 | 4.0000 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e1 | het | 96.0187 | 97.1564 | 94.9074 | 95.5891 | 205 | 6 | 205 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | het | 73.8307 | 99.1803 | 58.8015 | 95.5890 | 121 | 1 | 157 | 110 | 17 | 15.4545 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | het | 10.2564 | 6.6667 | 22.2222 | 95.5882 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5882 | 6 | 0 | 6 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 95.5882 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5882 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 95.5882 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 95.5882 | 0 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 95.5882 | 3 | 1 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.0000 | 100.0000 | 33.3333 | 95.5882 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5882 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.3488 | 91.1111 | 100.0000 | 95.5867 | 41 | 4 | 41 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | homalt | 46.8732 | 30.6107 | 100.0000 | 95.5861 | 832 | 1886 | 831 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | * | 77.7005 | 91.2387 | 67.6609 | 95.5856 | 302 | 29 | 431 | 206 | 49 | 23.7864 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 96.7742 | 93.7500 | 100.0000 | 95.5840 | 30 | 2 | 31 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 95.5840 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 95.5836 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 91.4286 | 100.0000 | 84.2105 | 95.5814 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.5801 | 8 | 1 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 82.8070 | 95.5800 | 0 | 0 | 236 | 49 | 46 | 93.8776 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 76.6355 | 71.9298 | 82.0000 | 95.5791 | 41 | 16 | 41 | 9 | 6 | 66.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.4545 | 91.3043 | 100.0000 | 95.5789 | 42 | 4 | 42 | 0 | 0 | ||
| qzeng-custom | INDEL | * | segdup | het | 96.2903 | 97.8854 | 94.7463 | 95.5784 | 1435 | 31 | 1587 | 88 | 19 | 21.5909 | |
| ghariani-varprowl | INDEL | D1_5 | segdup | * | 91.2316 | 92.0218 | 90.4550 | 95.5776 | 1015 | 88 | 1014 | 107 | 65 | 60.7477 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 95.5752 | 0 | 0 | 0 | 15 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | * | 91.6667 | 90.1639 | 93.2203 | 95.5752 | 275 | 30 | 275 | 20 | 6 | 30.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5752 | 0 | 0 | 10 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 86.6667 | 86.6667 | 86.6667 | 95.5752 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 86.6667 | 86.6667 | 86.6667 | 95.5752 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.5752 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |