PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19001-19050 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 95.8333 | 0 | 0 | 5 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.8333 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 25.0000 | 0.0000 | 95.8333 | 1 | 3 | 0 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 3 | 6 | 1 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.8333 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | map_siren | homalt | 9.0909 | 4.7619 | 100.0000 | 95.8333 | 1 | 20 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.8333 | 1 | 2 | 1 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.8333 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 95.8333 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | * | 50.0000 | 37.5000 | 75.0000 | 95.8333 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.8333 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 95.8333 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.8333 | 18 | 3 | 18 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.8333 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m0_e0 | het | 95.3846 | 93.9394 | 96.8750 | 95.8333 | 31 | 2 | 31 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 6 | 0 | 0 | ||