PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17751-17800 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 96.4392 | 10 | 0 | 10 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l250_m2_e1 | * | 69.6890 | 54.5610 | 96.4242 | 96.4387 | 1591 | 1325 | 1591 | 59 | 1 | 1.6949 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4380 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.4365 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | het | 97.7099 | 96.9697 | 98.4615 | 96.4364 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | map_l250_m1_e0 | het | 93.5733 | 95.7895 | 91.4573 | 96.4356 | 182 | 8 | 182 | 17 | 2 | 11.7647 | |
| jpowers-varprowl | INDEL | D6_15 | map_l250_m2_e1 | * | 90.4762 | 86.3636 | 95.0000 | 96.4349 | 19 | 3 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | * | 83.5781 | 93.9940 | 75.2404 | 96.4341 | 313 | 20 | 313 | 103 | 15 | 14.5631 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4333 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4333 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | map_l250_m1_e0 | * | 67.4516 | 51.9456 | 96.1538 | 96.4328 | 1375 | 1272 | 1375 | 55 | 2 | 3.6364 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 87.0647 | 94.5946 | 80.6452 | 96.4327 | 175 | 10 | 175 | 42 | 4 | 9.5238 | |
| ckim-gatk | SNP | tv | map_l250_m2_e0 | * | 69.3914 | 54.1985 | 96.4198 | 96.4303 | 1562 | 1320 | 1562 | 58 | 1 | 1.7241 | |
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | * | 58.7189 | 62.2642 | 55.5556 | 96.4296 | 66 | 40 | 70 | 56 | 31 | 55.3571 | |
| anovak-vg | INDEL | I6_15 | map_l250_m2_e0 | het | 40.0000 | 40.0000 | 40.0000 | 96.4286 | 2 | 3 | 2 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4286 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4286 | 0 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 96.4286 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 96.4286 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 96.4286 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 96.4286 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.4286 | 1 | 2 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 96.4286 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 96.4286 | 3 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 96.4286 | 3 | 3 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 96.4286 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 96.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 96.4286 | 5 | 1 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.4286 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.4286 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.4286 | 3 | 1 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 96.4286 | 2 | 3 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.4286 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 4 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||