PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17701-17750 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.4618 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 91.3043 | 96.4615 | 0 | 0 | 21 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4613 | 0 | 0 | 27 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4613 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | * | 92.9825 | 92.9825 | 92.9825 | 96.4607 | 106 | 8 | 106 | 8 | 3 | 37.5000 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e0 | * | 91.3580 | 89.4260 | 93.3754 | 96.4605 | 296 | 35 | 296 | 21 | 12 | 57.1429 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 89.5935 | 96.0784 | 83.9286 | 96.4602 | 49 | 2 | 47 | 9 | 4 | 44.4444 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 96.4602 | 8 | 1 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 96.4602 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 52.1739 | 40.0000 | 75.0000 | 96.4602 | 2 | 3 | 3 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 6.6667 | 3.8462 | 25.0000 | 96.4602 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 96.4602 | 0 | 0 | 1 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.4602 | 1 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4578 | 13 | 0 | 13 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 96.4578 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 90.5983 | 88.3333 | 92.9825 | 96.4574 | 53 | 7 | 53 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | * | 46.1771 | 32.9268 | 77.2727 | 96.4573 | 27 | 55 | 17 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4567 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4567 | 0 | 0 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | * | 39.0244 | 25.0000 | 88.8889 | 96.4567 | 8 | 24 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 42.8571 | 96.4557 | 0 | 0 | 6 | 8 | 3 | 37.5000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.4539 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4539 | 0 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 80.0000 | 96.4539 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.4539 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.4539 | 12 | 3 | 12 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | het | 75.1678 | 60.6061 | 98.9399 | 96.4527 | 560 | 364 | 560 | 6 | 1 | 16.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4520 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4520 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4520 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 24.2424 | 96.4516 | 0 | 0 | 8 | 25 | 3 | 12.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.4497 | 0 | 0 | 12 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.4497 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m2_e0 | * | 96.0000 | 100.0000 | 92.3077 | 96.4481 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l125_m1_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 96.4467 | 7 | 23 | 7 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l125_m1_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 96.4467 | 7 | 23 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | segdup | * | 92.5620 | 96.5517 | 88.8889 | 96.4467 | 56 | 2 | 56 | 7 | 2 | 28.5714 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.4467 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | segdup | * | 95.9962 | 92.3844 | 99.9019 | 96.4456 | 1019 | 84 | 1018 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.4455 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 96.4427 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | homalt | 91.3043 | 84.0000 | 100.0000 | 96.4427 | 21 | 4 | 36 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 96.4413 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | * | 78.6127 | 77.2727 | 80.0000 | 96.4413 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 70.0000 | 96.4413 | 0 | 0 | 7 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.4401 | 22 | 0 | 22 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.4401 | 22 | 0 | 22 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l250_m2_e0 | * | 67.7533 | 69.7885 | 65.8333 | 96.4399 | 231 | 100 | 237 | 123 | 63 | 51.2195 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | het | 92.8000 | 87.8788 | 98.3051 | 96.4393 | 58 | 8 | 58 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 96.4392 | 24 | 20 | 24 | 0 | 0 | ||