PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17001-17050 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 96.8000 | 1 | 2 | 0 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8000 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8000 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | homalt | 59.4286 | 47.7064 | 78.7879 | 96.7977 | 52 | 57 | 52 | 14 | 8 | 57.1429 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | het | 74.2268 | 60.0000 | 97.2973 | 96.7965 | 36 | 24 | 36 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 85.1562 | 98.1982 | 75.1724 | 96.7963 | 109 | 2 | 109 | 36 | 1 | 2.7778 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m1_e0 | * | 75.2137 | 60.2740 | 100.0000 | 96.7953 | 44 | 29 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | * | 32.2581 | 19.2308 | 100.0000 | 96.7949 | 5 | 21 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m0_e0 | * | 50.0000 | 33.3333 | 100.0000 | 96.7949 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.7949 | 0 | 0 | 5 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l250_m2_e1 | het | 65.6155 | 68.2464 | 63.1799 | 96.7945 | 144 | 67 | 151 | 88 | 29 | 32.9545 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | het | 67.1280 | 50.5208 | 100.0000 | 96.7944 | 97 | 95 | 97 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | * | 97.2973 | 100.0000 | 94.7368 | 96.7942 | 24 | 0 | 54 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.7930 | 22 | 0 | 22 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | segdup | hetalt | 77.7778 | 100.0000 | 63.6364 | 96.7930 | 7 | 0 | 7 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | SNP | tv | segdup | hetalt | 77.7778 | 100.0000 | 63.6364 | 96.7930 | 7 | 0 | 7 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.7930 | 11 | 4 | 11 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7914 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l250_m2_e1 | homalt | 36.0019 | 21.9526 | 100.0000 | 96.7910 | 389 | 1383 | 389 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 96.7890 | 9 | 2 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | * | hetalt | 72.7273 | 100.0000 | 57.1429 | 96.7890 | 1 | 0 | 8 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.5000 | 77.7778 | 100.0000 | 96.7890 | 7 | 2 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 96.7885 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | het | 96.6667 | 100.0000 | 93.5484 | 96.7876 | 15 | 0 | 29 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e0 | het | 74.4705 | 60.5101 | 96.8043 | 96.7872 | 1969 | 1285 | 1969 | 65 | 8 | 12.3077 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 98.0392 | 96.1538 | 100.0000 | 96.7866 | 25 | 1 | 25 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 97.9592 | 96.7848 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 97.9592 | 96.7848 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 96.7836 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 83.1169 | 72.7273 | 96.9697 | 96.7836 | 32 | 12 | 32 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.7828 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | het | 83.9216 | 96.3964 | 74.3056 | 96.7814 | 107 | 4 | 107 | 37 | 3 | 8.1081 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.3529 | 70.0000 | 100.0000 | 96.7807 | 42 | 18 | 48 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 96.7803 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.7803 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m1_e0 | * | 64.8438 | 48.5380 | 97.6471 | 96.7779 | 83 | 88 | 83 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.7742 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.3559 | 88.8889 | 75.0000 | 96.7742 | 24 | 3 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.7742 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.7742 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 96.7742 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |