PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16901-16950 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 96.8504 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.8504 | 0 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.8504 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8504 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 30.6069 | 35.1515 | 27.1028 | 96.8469 | 58 | 107 | 58 | 156 | 7 | 4.4872 | |
| jlack-gatk | INDEL | * | map_l250_m1_e0 | * | 89.9390 | 96.7213 | 84.0456 | 96.8466 | 295 | 10 | 295 | 56 | 4 | 7.1429 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.1166 | 86.3636 | 76.4706 | 96.8460 | 38 | 6 | 39 | 12 | 11 | 91.6667 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 97.0588 | 97.0588 | 97.0588 | 96.8460 | 66 | 2 | 66 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8447 | 48 | 0 | 52 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 98.0392 | 96.1538 | 100.0000 | 96.8434 | 25 | 1 | 25 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.8421 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 96.8421 | 3 | 1 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8421 | 0 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8421 | 6 | 0 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 88.8889 | 88.8889 | 88.8889 | 96.8421 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 33.3333 | 96.8421 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 96.8421 | 3 | 2 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 96.8421 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8421 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.8401 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 80.9816 | 75.0000 | 88.0000 | 96.8394 | 15 | 5 | 22 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8391 | 0 | 0 | 11 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 76.9231 | 96.8370 | 0 | 0 | 10 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.8354 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e1 | * | 32.2581 | 19.2308 | 100.0000 | 96.8354 | 5 | 21 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.4444 | 73.0769 | 100.0000 | 96.8333 | 19 | 7 | 19 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.8333 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.8326 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | hetalt | 75.9494 | 65.2174 | 90.9091 | 96.8300 | 15 | 8 | 10 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.2995 | 89.4737 | 76.1905 | 96.8278 | 17 | 2 | 16 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | * | 96.3994 | 96.4981 | 96.3009 | 96.8271 | 496 | 18 | 781 | 30 | 19 | 63.3333 | |
| ckim-gatk | SNP | tv | map_l250_m1_e0 | het | 70.9926 | 56.6312 | 95.1128 | 96.8261 | 1012 | 775 | 1012 | 52 | 1 | 1.9231 | |
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | het | 72.0683 | 57.7077 | 95.9441 | 96.8258 | 2744 | 2011 | 2744 | 116 | 8 | 6.8966 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.8254 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.8254 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8254 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 75.0000 | 96.8254 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8254 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 4.3478 | 0.0000 | 96.8254 | 4 | 88 | 0 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 96.8254 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8254 | 1 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 96.8254 | 6 | 0 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 6.3636 | 3.3981 | 50.0000 | 96.8254 | 7 | 199 | 2 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 2 | 0 | 2 | 0 | 0 | ||